Author results

2E26
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CRYSTAL STRUCTURE OF TWO REPEAT FRAGMENT OF REELIN
Descriptor:Reelin, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Yasui, N., Nogi, T., Kitao, T., Takagi, J.
Deposit date:2006-11-08
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3A7Q
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STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF REELIN BY ITS RECEPTORS
Descriptor:Reelin, Low-density lipoprotein receptor-related protein 8, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yasui, N., Nogi, T., Takagi, J.
Deposit date:2009-10-01
Release date:2010-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Specific Recognition of Reelin by Its Receptors
Structure, 18, 2010
4JMG
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CRYSTAL STRUCTURE OF THE SYNTHETIC PROTEIN IN COMPLEX WITH PY PEPTIDE
Descriptor:Clamp Ptpn11_pY580, Tyrosine-protein phosphatase non-receptor type 11, MAGNESIUM ION
Authors:Yasui, N., Smith, L., Koide, S.
Deposit date:2013-03-14
Release date:2014-04-23
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation.
Mol.Cell, 54, 2014
4JMH
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CRYSTAL STRUCTURE OF SYNTHETIC PROTEIN IN COMPLEX WITH DOUBLE PY PEPTIDE
Descriptor:Clamp Shc1_pY239/240, SHC-transforming protein 1
Authors:Yasui, N., Smith, L., Koide, S.
Deposit date:2013-03-14
Release date:2014-04-23
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (2.408 Å)
Cite:Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation.
Mol.Cell, 54, 2014
3AFC
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MOUSE SEMAPHORIN 6A EXTRACELLULAR DOMAIN
Descriptor:Semaphorin-6A, N-ACETYL-D-GLUCOSAMINE
Authors:Yasui, N., Nogi, T., Mihara, E., Takagi, J.
Deposit date:2010-02-26
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
5B4X
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CRYSTAL STRUCTURE OF THE APOER2 ECTODOMAIN IN COMPLEX WITH THE REELIN R56 FRAGMENT
Descriptor:Reelin, Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, ...
Authors:Yasui, N., Hirai, H., Yamashita, K., Takagi, J., Nogi, T.
Deposit date:2016-04-20
Release date:2017-04-26
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
To Be Published
5X2M
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CRYSTAL STRUCTURE OF THE MEDAKA FISH TASTE RECEPTOR T1R2A-T1R3 LIGAND BINDING DOMAINS IN COMPLEX WITH L-GLUTAMINE
Descriptor:Taste receptor, type 1, member 2a, ...
Authors:Nuemket, N., Yasui, N., Atsumi, N., Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.206 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
5X2N
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CRYSTAL STRUCTURE OF THE MEDAKA FISH TASTE RECEPTOR T1R2A-T1R3 LIGAND BINDING DOMAINS IN COMPLEX WITH L-ALANINE
Descriptor:Taste receptor, type 1, member 2a, ...
Authors:Nuemket, N., Yasui, N., Atsumi, N., Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
5X2O
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CRYSTAL STRUCTURE OF THE MEDAKA FISH TASTE RECEPTOR T1R2A-T1R3 LIGAND BINDING DOMAINS IN COMPLEX WITH L-ARGININE
Descriptor:Taste receptor, type 1, member 2a, ...
Authors:Nuemket, N., Yasui, N., Atsumi, N., Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
5X2P
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CRYSTAL STRUCTURE OF THE MEDAKA FISH TASTE RECEPTOR T1R2A-T1R3 LIGAND BINDING DOMAINS IN COMPLEX WITH L-GLUTAMATE
Descriptor:Taste receptor, type 1, member 2a, ...
Authors:Nuemket, N., Yasui, N., Atsumi, N., Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.608 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
5X2Q
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CRYSTAL STRUCTURE OF THE MEDAKA FISH TASTE RECEPTOR T1R2A-T1R3 LIGAND BINDING DOMAINS IN COMPLEX WITH GLYCINE
Descriptor:Taste receptor, type 1, member 2a, ...
Authors:Nuemket, N., Yasui, N., Atsumi, N., Yamashita, A.
Deposit date:2017-02-02
Release date:2017-05-24
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
3AL8
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PLEXIN A2 / SEMAPHORIN 6A COMPLEX
Descriptor:Semaphorin-6A, Plexin-A2, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Nogi, T., Yasui, N., Mihara, E., Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3AL9
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MOUSE PLEXIN A2 EXTRACELLULAR DOMAIN
Descriptor:Plexin-A2, 1,2-ETHANEDIOL, N-ACETYL-D-GLUCOSAMINE
Authors:Nogi, T., Yasui, N., Mihara, E., Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
2DDU
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CRYSTAL STRUCTURE OF THE THIRD REPEAT DOMAIN OF REELIN
Descriptor:reelin, CALCIUM ION, CHLORIDE ION, ...
Authors:Nogi, T., Yasui, N., Takagi, J.
Deposit date:2006-02-03
Release date:2006-09-26
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography
Embo J., 25, 2006
3ASI
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ALPHA-NEUREXIN-1 ECTODOMAIN FRAGMENT; LNS5-EGF3-LNS6
Descriptor:Neurexin-1-alpha, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE
Authors:Tanaka, H., Nogi, T., Yasui, N., Takagi, J.
Deposit date:2010-12-13
Release date:2011-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
Plos One, 6, 2011
5B4Y
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CRYSTAL STRUCTURE OF THE LA12 FRAGMENT OF APOER2
Descriptor:Low-density lipoprotein receptor-related protein 8, CALCIUM ION
Authors:Nogi, T., Tabata, S., Hirai, H., Yasui, N., Takagi, J.
Deposit date:2016-04-20
Release date:2017-04-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
To Be Published
6IR6
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GREEN FLUORESCENT PROTEIN VARIANT GFPUV WITH THE NATIVE LYSINE RESIDUE AT THE C-TERMINUS
Descriptor:Green fluorescent protein, SULFATE ION
Authors:Nakatani, T., Yasui, N., Yamashita, A.
Deposit date:2018-11-12
Release date:2019-04-03
Method:X-RAY DIFFRACTION (1.642 Å)
Cite:Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli.
Sci Rep, 9, 2019
6IR7
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GREEN FLUORESCENT PROTEIN VARIANT GFPUV WITH THE MODIFICATION TO 6-HYDROXYNORLEUCINE AT THE C-TERMINUS
Descriptor:Green fluorescent protein, 6-HYDROXY-L-NORLEUCINE, SULFATE ION, ...
Authors:Nakatani, T., Yasui, N., Yamashita, A.
Deposit date:2018-11-12
Release date:2019-04-03
Method:X-RAY DIFFRACTION (1.277 Å)
Cite:Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli.
Sci Rep, 9, 2019
2ZOT
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 1)
Descriptor:Spondin-1
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZOU
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 2)
Descriptor:Spondin-1, 1,2-ETHANEDIOL
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZPK
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CRYSTAL STRUCTURE OF P20.1 FAB FRAGMENT IN COMPLEX WITH ITS ANTIGEN PEPTIDE
Descriptor:IgG1-lambda P20.1 Fab (light chain), IgG1-lambda P20.1 Fab (heavy chain), Proteinase-activated receptor 4, ...
Authors:Nogi, T., Sanagawa, T., Takagi, J.
Deposit date:2008-07-16
Release date:2008-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification
Protein Sci., 17, 2008
4JE4
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CRYSTAL STRUCTURE OF MONOBODY NSA1/SHP2 N-SH2 DOMAIN COMPLEX
Descriptor:Tyrosine-protein phosphatase non-receptor type 11, Monobody NSa1
Authors:Sha, F., Koide, S.
Deposit date:2013-02-26
Release date:2013-08-28
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Dissection of the BCR-ABL signaling network using highly specific monobody inhibitors to the SHP2 SH2 domains.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JEG
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CRYSTAL STRUCTURE OF MONOBODY CS1/SHP2 C-SH2 DOMAIN COMPLEX
Descriptor:Tyrosine-protein phosphatase non-receptor type 11, Monobody CS1
Authors:Sha, F., Koide, S.
Deposit date:2013-02-26
Release date:2013-08-28
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dissection of the BCR-ABL signaling network using highly specific monobody inhibitors to the SHP2 SH2 domains.
Proc.Natl.Acad.Sci.USA, 110, 2013