Author results

2LUH
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NMR STRUCTURE OF THE VTA1-VPS60 COMPLEX
Descriptor:Vacuolar protein sorting-associated protein VTA1, Vacuolar protein-sorting-associated protein 60
Authors:Yang, Z., Vild, C., Ju, J., Zhang, X., Liu, J., Shen, J., Zhao, B., Lan, W., Gong, F., Liu, M., Cao, C., Xu, Z.
Deposit date:2012-06-13
Release date:2012-11-07
Last modified:2013-01-09
Method:SOLUTION NMR
Cite:Structural Basis of Molecular Recognition between ESCRT-III-like Protein Vps60 and AAA-ATPase Regulator Vta1 in the Multivesicular Body Pathway.
J.Biol.Chem., 287, 2012
1M1J
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CRYSTAL STRUCTURE OF NATIVE CHICKEN FIBRINOGEN WITH TWO DIFFERENT BOUND LIGANDS
Descriptor:Fibrinogen alpha subunit, Fibrinogen beta chain, Fibrinogen gamma chain, ...
Authors:Yang, Z., Kollman, J.M., Pandi, L., Doolittle, R.F.
Deposit date:2002-06-19
Release date:2002-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Native Chicken Fibrinogen at 2.7 A Resolution
Biochemistry, 40, 2001
1N86
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CRYSTAL STRUCTURE OF HUMAN D-DIMER FROM CROSS-LINKED FIBRIN COMPLEXED WITH GPR AND GHRPLDK PEPTIDE LIGANDS.
Descriptor:Fibrin alpha/alpha-E chain, Fibrin beta chain, Fibrin gamma chain, ...
Authors:Yang, Z., Pandi, L., Doolittle, R.F.
Deposit date:2002-11-19
Release date:2003-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface.
Biochemistry, 41, 2002
1DO8
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CRYSTAL STRUCTURE OF A CLOSED FORM OF HUMAN MITOCHONDRIAL NAD(P)+-DEPENDENT MALIC ENZYME
Descriptor:MALIC ENZYME, OXALATE ION, MANGANESE (II) ION, ...
Authors:Yang, Z., Floyd, D.L., Loeber, G., Tong, L.
Deposit date:1999-12-19
Release date:2000-03-06
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1EFK
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STRUCTURE OF HUMAN MALIC ENZYME IN COMPLEX WITH KETOMALONATE
Descriptor:MALIC ENZYME, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yang, Z., Floyd, D.L., Loeber, G., Tong, L.
Deposit date:2000-02-09
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1EFL
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HUMAN MALIC ENZYME IN A QUATERNARY COMPLEX WITH NAD, MG, AND TARTRONATE
Descriptor:MALIC ENZYME, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yang, Z., Floyd, D.L., Loeber, G., Tong, L.
Deposit date:2000-02-09
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1EI3
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CRYSTAL STRUCTURE OF NATIVE CHICKEN FIBRINOGEN
Descriptor:FIBRINOGEN
Authors:Yang, Z., Mochalkin, I., Veerapandian, L., Riley, M., Doolittle, R.F.
Deposit date:2000-02-23
Release date:2000-05-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Crystal structure of native chicken fibrinogen at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
1GQ2
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MALIC ENZYME FROM PIGEON LIVER
Descriptor:MALIC ENZYME, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, OXALATE ION, ...
Authors:Yang, Z., Zhang, H., Liang, T.
Deposit date:2001-11-19
Release date:2002-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme
Protein Sci., 11, 2002
1GZ3
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MOLECULAR MECHANISM FOR THE REGULATION OF HUMAN MITOCHONDRIAL NAD(P)+-DEPENDENT MALIC ENZYME BY ATP AND FUMARATE
Descriptor:NAD-dependent malic enzyme, mitochondrial, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yang, Z., Lanks, C.W., Tong, L.
Deposit date:2002-05-14
Release date:2003-05-22
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme by ATP and Fumarate
Structure, 10, 2002
1GZ4
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MOLECULAR MECHANISM OF THE REGULATION OF HUMAN MITOCHONDRIAL NAD(P)+-DEPENDENT MALIC ENZYME BY ATP AND FUMARATE
Descriptor:NAD-DEPENDENT MALIC ENZYME, ADENOSINE-5'-TRIPHOSPHATE, TARTRONATE, ...
Authors:Yang, Z., Lanks, C.W., Tong, L.
Deposit date:2002-05-15
Release date:2002-07-25
Last modified:2011-11-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)(+)-Dependent Malic Enzyme by ATP and Fumarate
Structure, 10, 2002
1H2H
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CRYSTAL STRUCTURE OF TM1643
Descriptor:HYPOTHETICAL PROTEIN TM1643, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yang, Z., Savchenko, A., Edwards, A., Arrowsmith, C., Tong, L., Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-08-08
Release date:2002-08-15
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.
J. Biol. Chem., 278, 2003
1LWU
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CRYSTAL STRUCTURE OF FRAGMENT D FROM LAMPREY FIBRINOGEN COMPLEXED WITH THE PEPTIDE GLY-HIS-ARG-PRO-AMIDE
Descriptor:Fibrinogen alpha-1 chain, Fibrinogen beta chain, Fibrinogen gamma chain, ...
Authors:Yang, Z., Spraggon, G., Pandi, L., Everse, S.J., Riley, M., Doolittle, R.F.
Deposit date:2002-06-03
Release date:2002-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide.
Biochemistry, 41, 2002
1N73
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FIBRIN D-DIMER, LAMPREY COMPLEXED WITH THE PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE
Descriptor:Fibrin alpha-1 chain, Fibrin beta chain, Fibrin gamma chain, ...
Authors:Yang, Z., Pandi, L., Doolittle, R.F.
Deposit date:2002-11-12
Release date:2003-01-07
Last modified:2017-03-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface
Biochemistry, 41, 2002
1N8E
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FRAGMENT DOUBLE-D FROM HUMAN FIBRIN
Descriptor:Fibrin alpha/alpha-E chain, Fibrin beta chain, Fibrin gamma chain
Authors:Yang, Z., Pandi, L., Doolittle, R.F.
Deposit date:2002-11-20
Release date:2003-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:The Crystal Structure of Fragment Double-D from Cross-Linked Lamprey Fibrin Reveals Isopeptide Linkages across an Unexpected D-D Interface
Biochemistry, 41, 2002
1PJL
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CRYSTAL STRUCTURE OF HUMAN M-NAD-ME IN TERNARY COMPLEX WITH NAD AND LU3+
Descriptor:NAD-dependent malic enzyme, mitochondrial, LUTETIUM (III) ION, ...
Authors:Yang, Z., Batra, R., Floyd, D.L., Hung, H.-C., Chang, G.-G., Tong, L.
Deposit date:2003-06-03
Release date:2003-06-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Potent and competitive inhibition of malic enzymes by lanthanide ions
Biochem.Biophys.Res.Commun., 274, 2000
1Q0S
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BINARY STRUCTURE OF T4DAM WITH ADOHCY
Descriptor:DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.
Deposit date:2003-07-17
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the bacteriophage T4 DNA adenine methyltransferase
Nat.Struct.Biol., 10, 2003
1Q0T
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TERNARY STRUCTURE OF T4DAM WITH ADOHCY AND DNA
Descriptor:5'-D(*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*T)-3', DNA adenine methylase, IODIDE ION, ...
Authors:Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.
Deposit date:2003-07-17
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the bacteriophage T4 DNA adenine methyltransferase
Nat.Struct.Biol., 10, 2003
1T43
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CRYSTAL STRUCTURE ANALYSIS OF E.COLI PROTEIN (N5)-GLUTAMINE METHYLTRANSFERASE (HEMK)
Descriptor:Protein methyltransferase hemK, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yang, Z., Shipman, L., Zhang, M., Anton, B.P., Roberts, R.J., Cheng, X.
Deposit date:2004-04-28
Release date:2004-06-29
Last modified:2014-09-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase.
J.Mol.Biol., 340, 2004
1YNM
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CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE HINP1I
Descriptor:R.HinP1I restriction endonuclease
Authors:Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.J., Cheng, X.
Deposit date:2005-01-24
Release date:2005-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI
Nucleic Acids Res., 33, 2005
3D2U
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STRUCTURE OF UL18, A PEPTIDE-BINDING VIRAL MHC MIMIC, BOUND TO A HOST INHIBITORY RECEPTOR
Descriptor:UL18 protein, Beta-2-microglobulin, Leukocyte immunoglobulin-like receptor subfamily B member 1, ...
Authors:Yang, Z., Bjorkman, P.J.
Deposit date:2008-05-08
Release date:2008-07-08
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of UL18, a peptide-binding viral MHC mimic, bound to a host inhibitory receptor
Proc.Natl.Acad.Sci.Usa, 105, 2008
3IT8
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CRYSTAL STRUCTURE OF TNF ALPHA COMPLEXED WITH A POXVIRUS MHC-RELATED TNF BINDING PROTEIN
Descriptor:Tumor necrosis factor, 2L protein, N-ACETYL-D-GLUCOSAMINE
Authors:Yang, Z., West Jr., A.P., Bjorkman, P.J.
Deposit date:2009-08-27
Release date:2009-10-20
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of TNFalpha complexed with a poxvirus MHC-related TNF binding protein
Nat.Struct.Mol.Biol., 16, 2009
4G1T
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CRYSTAL STRUCTURE OF INTERFERON-STIMULATED GENE 54
Descriptor:Interferon-induced protein with tetratricopeptide repeats 2
Authors:Yang, Z., Liang, H., Zhou, Q., Li, Y., Chen, H., Ye, W., Chen, D., Fleming, J., Shu, H., Liu, Y.
Deposit date:2012-07-11
Release date:2012-08-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of ISG54 reveals a novel RNA binding structure and potential functional mechanisms.
Cell Res., 2012
5FIQ
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EXONUCLEASE DOMAIN-CONTAINING 1 (EXD1) IN THE NATIVE CONFORMATION
Descriptor:EXD1
Authors:Yang, Z., Chen, K.M., Pandey, R.R., Homolka, D., Reuter, M., Rodino Janeiro, B.K., Sachidanandam, R., Fauvarque, M.O., McCarthy, A.A., Pillai, R.S.
Deposit date:2015-10-01
Release date:2015-12-23
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Piwi Slicing and Exd1 Drive Biogenesis of Nuclear Pirnas from Cytosolic Targets of the Mouse Pirna Pathway
Mol.Cell, 61, 2016
5FIS
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EXONUCLEASE DOMAIN-CONTAINING 1 (EXD1) IN THE GD BOUND CONFORMATION
Descriptor:EXD1, GADOLINIUM ATOM
Authors:Yang, Z., Chen, K.M., Pandey, R.R., Homolka, D., Reuter, M., Rodino Janeiro, B.K., Sachidanandam, R., Fauvarque, M.O., McCarthy, A.A., Pillai, R.S.
Deposit date:2015-10-02
Release date:2015-12-23
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Piwi Slicing and Exd1 Drive Biogenesis of Nuclear Pirnas from Cytosolic Targets of the Mouse Pirna Pathway
Mol.Cell, 61, 2016
5GIN
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CRYSTAL STRUCTURE OF BOX C/D RNP WITH 12 NT GUIDE REGIONS AND 9 NT SUBSTRATES
Descriptor:C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, ...
Authors:Yang, Z., Lin, J., Ye, K.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2016-10-12
Method:X-RAY DIFFRACTION (3.308 Å)
Cite:Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Proc.Natl.Acad.Sci.USA, 113, 2016