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1DO8
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BU of 1do8 by Molmil
CRYSTAL STRUCTURE OF A CLOSED FORM OF HUMAN MITOCHONDRIAL NAD(P)+-DEPENDENT MALIC ENZYME
Descriptor: MALIC ENZYME, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yang, Z, Floyd, D.L, Loeber, G, Tong, L.
Deposit date:1999-12-19
Release date:2000-03-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1EFL
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BU of 1efl by Molmil
HUMAN MALIC ENZYME IN A QUATERNARY COMPLEX WITH NAD, MG, AND TARTRONATE
Descriptor: MAGNESIUM ION, MALIC ENZYME, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yang, Z, Floyd, D.L, Loeber, G, Tong, L.
Deposit date:2000-02-09
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1EI3
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BU of 1ei3 by Molmil
CRYSTAL STRUCTURE OF NATIVE CHICKEN FIBRINOGEN
Descriptor: FIBRINOGEN
Authors:Yang, Z, Mochalkin, I, Veerapandian, L, Riley, M, Doolittle, R.F.
Deposit date:2000-02-23
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Crystal structure of native chicken fibrinogen at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EFK
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BU of 1efk by Molmil
STRUCTURE OF HUMAN MALIC ENZYME IN COMPLEX WITH KETOMALONATE
Descriptor: ALPHA-KETOMALONIC ACID, MAGNESIUM ION, MALIC ENZYME, ...
Authors:Yang, Z, Floyd, D.L, Loeber, G, Tong, L.
Deposit date:2000-02-09
Release date:2000-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a closed form of human malic enzyme and implications for catalytic mechanism.
Nat.Struct.Biol., 7, 2000
1GQ2
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BU of 1gq2 by Molmil
Malic Enzyme from Pigeon Liver
Descriptor: CHLORIDE ION, MALIC ENZYME, MANGANESE (II) ION, ...
Authors:Yang, Z, Zhang, H, Liang, T.
Deposit date:2001-11-19
Release date:2002-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme
Protein Sci., 11, 2002
1GZ4
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BU of 1gz4 by Molmil
molecular mechanism of the regulation of human mitochondrial NAD(P)+-dependent malic enzyme by ATP and fumarate
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FUMARIC ACID, MANGANESE (II) ION, ...
Authors:Yang, Z, Lanks, C.W, Tong, L.
Deposit date:2002-05-15
Release date:2002-07-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)(+)-Dependent Malic Enzyme by ATP and Fumarate
Structure, 10, 2002
1H2H
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BU of 1h2h by Molmil
Crystal structure of TM1643
Descriptor: HYPOTHETICAL PROTEIN TM1643, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yang, Z, Savchenko, A, Edwards, A, Arrowsmith, C, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-08-08
Release date:2002-08-15
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.
J. Biol. Chem., 278, 2003
1M1J
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BU of 1m1j by Molmil
Crystal structure of native chicken fibrinogen with two different bound ligands
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yang, Z, Kollman, J.M, Pandi, L, Doolittle, R.F.
Deposit date:2002-06-19
Release date:2002-06-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Native Chicken Fibrinogen at 2.7 A Resolution
Biochemistry, 40, 2001
1N86
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BU of 1n86 by Molmil
Crystal structure of human D-dimer from cross-linked fibrin complexed with GPR and GHRPLDK peptide ligands.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CALCIUM ION, Fibrin alpha/alpha-E chain, ...
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-19
Release date:2003-01-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface.
Biochemistry, 41, 2002
8D5C
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BU of 8d5c by Molmil
anti-HIV-1 gp120-sCD4 complex antibody CG10 Fab in complex with B41-sCD4
Descriptor: CG10 Fab heavy chain, CG10 Fab light chain, Envelope glycoprotein gp160, ...
Authors:Yang, Z, Bjorkman, P.J, Gershoni, J.M.
Deposit date:2022-06-04
Release date:2022-11-16
Last modified:2023-01-04
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Antibody Recognition of CD4-Induced Open HIV-1 Env Trimers.
J.Virol., 96, 2022
8D54
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BU of 8d54 by Molmil
anti HIV gp120/CD4 complex antibody CG10 Fab
Descriptor: CG10 Fab heavy chain, CG10 Fab light chain
Authors:Yang, Z, Bjorkman, P.J.
Deposit date:2022-06-03
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Antibody Recognition of CD4-Induced Open HIV-1 Env Trimers.
J.Virol., 96, 2022
1GZ3
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BU of 1gz3 by Molmil
Molecular mechanism for the regulation of human mitochondrial NAD(P)+-dependent malic enzyme by ATP and fumarate
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FUMARIC ACID, MANGANESE (II) ION, ...
Authors:Yang, Z, Lanks, C.W, Tong, L.
Deposit date:2002-05-14
Release date:2003-05-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Mechanism for the Regulation of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme by ATP and Fumarate
Structure, 10, 2002
1LWU
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BU of 1lwu by Molmil
Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yang, Z, Spraggon, G, Pandi, L, Everse, S.J, Riley, M, Doolittle, R.F.
Deposit date:2002-06-03
Release date:2002-08-23
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide.
Biochemistry, 41, 2002
2LUH
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BU of 2luh by Molmil
NMR structure of the Vta1-Vps60 complex
Descriptor: Vacuolar protein sorting-associated protein VTA1, Vacuolar protein-sorting-associated protein 60
Authors:Yang, Z, Vild, C, Ju, J, Zhang, X, Liu, J, Shen, J, Zhao, B, Lan, W, Gong, F, Liu, M, Cao, C, Xu, Z.
Deposit date:2012-06-13
Release date:2012-11-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Basis of Molecular Recognition between ESCRT-III-like Protein Vps60 and AAA-ATPase Regulator Vta1 in the Multivesicular Body Pathway.
J.Biol.Chem., 287, 2012
1N8E
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BU of 1n8e by Molmil
Fragment Double-D from Human Fibrin
Descriptor: Fibrin alpha/alpha-E chain, Fibrin beta chain, Fibrin gamma chain
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-20
Release date:2003-01-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:The Crystal Structure of Fragment Double-D from Cross-Linked Lamprey Fibrin Reveals Isopeptide Linkages across an Unexpected D-D Interface
Biochemistry, 41, 2002
1N73
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BU of 1n73 by Molmil
Fibrin D-Dimer, Lamprey complexed with the PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrin alpha-1 chain, ...
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-12
Release date:2003-01-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface
Biochemistry, 41, 2002
1Q0S
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BU of 1q0s by Molmil
Binary Structure of T4DAM with AdoHcy
Descriptor: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yang, Z, Horton, J.R, Zhou, L, Zhang, X.J, Dong, A, Zhang, X, Schlagman, S.L, Kossykh, V, Hattman, S, Cheng, X.
Deposit date:2003-07-17
Release date:2003-09-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the bacteriophage T4 DNA adenine methyltransferase
Nat.Struct.Biol., 10, 2003
1PJL
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BU of 1pjl by Molmil
Crystal structure of human m-NAD-ME in ternary complex with NAD and Lu3+
Descriptor: LUTETIUM (III) ION, NAD-dependent malic enzyme, mitochondrial, ...
Authors:Yang, Z, Batra, R, Floyd, D.L, Hung, H.-C, Chang, G.-G, Tong, L.
Deposit date:2003-06-03
Release date:2003-06-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Potent and competitive inhibition of malic enzymes by lanthanide ions
Biochem.Biophys.Res.Commun., 274, 2000
1Q0T
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BU of 1q0t by Molmil
Ternary Structure of T4DAM with AdoHcy and DNA
Descriptor: 5'-D(*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*T)-3', DNA adenine methylase, IODIDE ION, ...
Authors:Yang, Z, Horton, J.R, Zhou, L, Zhang, X.J, Dong, A, Zhang, X, Schlagman, S.L, Kossykh, V, Hattman, S, Cheng, X.
Deposit date:2003-07-17
Release date:2003-09-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the bacteriophage T4 DNA adenine methyltransferase
Nat.Struct.Biol., 10, 2003
3D2U
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BU of 3d2u by Molmil
Structure of UL18, a Peptide-Binding Viral MHC Mimic, Bound to a Host Inhibitory Receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Actin, Beta-2-microglobulin, ...
Authors:Yang, Z, Bjorkman, P.J.
Deposit date:2008-05-08
Release date:2008-07-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of UL18, a peptide-binding viral MHC mimic, bound to a host inhibitory receptor
Proc.Natl.Acad.Sci.Usa, 105, 2008
6U0N
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BU of 6u0n by Molmil
Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E51 Fab heavy chain, ...
Authors:Yang, Z, Bjorkman, P.J.
Deposit date:2019-08-14
Release date:2019-12-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Asymmetric opening of HIV-1 Env bound to CD4 and a coreceptor-mimicking antibody.
Nat.Struct.Mol.Biol., 26, 2019
6U0L
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BU of 6u0l by Molmil
Asymmetrically open conformational state (Class I) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E51 Fab heavy chain, ...
Authors:Yang, Z, Bjorkman, P.J.
Deposit date:2019-08-14
Release date:2019-12-11
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Asymmetric opening of HIV-1 Env bound to CD4 and a coreceptor-mimicking antibody.
Nat.Struct.Mol.Biol., 26, 2019
1T43
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BU of 1t43 by Molmil
Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK)
Descriptor: Protein methyltransferase hemK, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yang, Z, Shipman, L, Zhang, M, Anton, B.P, Roberts, R.J, Cheng, X.
Deposit date:2004-04-28
Release date:2004-06-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase.
J.Mol.Biol., 340, 2004
1YNM
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BU of 1ynm by Molmil
Crystal structure of restriction endonuclease HinP1I
Descriptor: R.HinP1I restriction endonuclease
Authors:Yang, Z, Horton, J.R, Maunus, R, Wilson, G.G, Roberts, R.J, Cheng, X.
Deposit date:2005-01-24
Release date:2005-05-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI
Nucleic Acids Res., 33, 2005
3IT8
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BU of 3it8 by Molmil
Crystal structure of TNF alpha complexed with a poxvirus MHC-related TNF binding protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2L protein, Tumor necrosis factor
Authors:Yang, Z, West Jr, A.P, Bjorkman, P.J.
Deposit date:2009-08-27
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of TNFalpha complexed with a poxvirus MHC-related TNF binding protein
Nat.Struct.Mol.Biol., 16, 2009

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