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1BVE
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BU of 1bve by Molmil
HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES
Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1BVG
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BU of 1bvg by Molmil
HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE
Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1JU8
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BU of 1ju8 by Molmil
Solution structure of Leginsulin, a plant hormon
Descriptor: Leginsulin
Authors:Yamazaki, T, Takaoka, M, Katoh, E, Hanada, K, Sakita, M, Sakata, K, Nishiuchi, Y, Hirano, H.
Deposit date:2001-08-23
Release date:2003-06-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes
EUR.J.BIOCHEM., 270, 2003
1RCH
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BU of 1rch by Molmil
SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES
Descriptor: RIBONUCLEASE HI
Authors:Yamazaki, T, Fujiwara, M, Kato, T, Yamasaki, K, Nagayama, K.
Deposit date:1995-06-23
Release date:1997-02-12
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of Ribonuclease Hi from Escherichia Coli
Biol.Pharm.Bull., 23, 2000
1C9F
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BU of 1c9f by Molmil
NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
Descriptor: CASPASE-ACTIVATED DNASE
Authors:Yamazaki, T, Uegaki, K.
Deposit date:1999-08-02
Release date:2000-02-16
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor.
J.Mol.Biol., 297, 2000
1IRZ
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BU of 1irz by Molmil
Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
Descriptor: ARR10-B
Authors:Yamazaki, T, Katoh, E, Hosoda, K, Mizuno, T.
Deposit date:2001-10-25
Release date:2003-02-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
PLANT CELL, 14, 2003
1AYG
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BU of 1ayg by Molmil
SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor: CYTOCHROME C-552, HEME C
Authors:Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
1BXD
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BU of 1bxd by Molmil
NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ))
Authors:Tanaka, T, Saha, S.K, Tomomori, C, Ishima, R, Liu, D, Tong, K.I, Park, H, Dutta, R, Qin, L, Swindells, M.B, Yamazaki, T, Ono, A.M, Kainosho, M, Inouye, M, Ikura, M.
Deposit date:1998-10-02
Release date:1999-10-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ.
Nature, 396, 1998
1C4L
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BU of 1c4l by Molmil
SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
Authors:Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
7D2O
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BU of 7d2o by Molmil
Solution structure of Gaussia Luciferase by NMR
Descriptor: Luciferase
Authors:Kobayashi, N, Wu, N, Kuroda, Y, Yamazaki, T.
Deposit date:2020-09-17
Release date:2020-12-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR.
Sci Rep, 10, 2020
1DCJ
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BU of 1dcj by Molmil
SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION
Descriptor: YHHP PROTEIN
Authors:Katoh, E, Hatta, T, Shindo, H, Mizuno, T, Yamazaki, T.
Deposit date:1999-11-05
Release date:2001-07-18
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division.
J.Mol.Biol., 304, 2000
3A1Z
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BU of 3a1z by Molmil
Crystal structure of juvenile hormone binding protein from silkworm
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Hemolymph juvenile hormone binding protein, ZINC ION
Authors:Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T.
Deposit date:2009-04-27
Release date:2010-04-28
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP
Plos One, 8, 2013
3AOT
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BU of 3aot by Molmil
Crystal structure of juvenile hormone binding protein from silkworm in its apo form
Descriptor: DI(HYDROXYETHYL)ETHER, Hemolymph juvenile hormone binding protein, TETRAETHYLENE GLYCOL, ...
Authors:Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T.
Deposit date:2010-10-06
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori.
Sci Rep, 1, 2011
3AOS
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BU of 3aos by Molmil
Crystal structure of juvenile hormone binding protein from silkworm in complex with JH II
Descriptor: Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R,3S)-3-ethyl-3-methyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
Authors:Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T.
Deposit date:2010-10-06
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
1F2R
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BU of 1f2r by Molmil
NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD
Descriptor: CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE
Authors:Otomo, T, Sakahira, H, Uegaki, K, Nagata, S, Yamazaki, T.
Deposit date:2000-05-29
Release date:2000-06-08
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the heterodimeric complex between CAD domains of CAD and ICAD.
Nat.Struct.Biol., 7, 2000
1COO
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BU of 1coo by Molmil
THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT
Descriptor: RNA POLYMERASE ALPHA SUBUNIT
Authors:Jeon, Y.H, Negishi, T, Shirakawa, M, Yamazaki, T, Fujita, N, Ishihama, A, Kyogoku, Y.
Deposit date:1995-10-09
Release date:1996-03-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the activator contact domain of the RNA polymerase alpha subunit.
Science, 270, 1995
1DOQ
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BU of 1doq by Molmil
THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor: RNA POLYMERASE ALPHA SUBUNIT
Authors:Wada, T, Yamazaki, T, Kyogoku, Y.
Deposit date:1999-12-21
Release date:2000-01-05
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus.
J.Biol.Chem., 275, 2000
6M0Q
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BU of 6m0q by Molmil
Hydroxylamine oxidoreductase from Nitrosomonas europaea
Descriptor: Aerobic hydroxylamine oxidoreductase, DI(HYDROXYETHYL)ETHER, HEME C, ...
Authors:Fujiwara, T, Fujimoto, Z, Nishigaya, Y, Yamazaki, T.
Deposit date:2020-02-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Enhancement of the activity of hydroxylamine oxidoreductase by juglone, plant secondary metabolite.
To Be Published
6M0P
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BU of 6m0p by Molmil
Hydroxylamine oxidoreductase in complex with juglone
Descriptor: 5-hydroxynaphthalene-1,4-dione, Aerobic hydroxylamine oxidoreductase, DI(HYDROXYETHYL)ETHER, ...
Authors:Fujiwara, T, Fujimoto, Z, Nishigaya, Y, Yamazaki, T.
Deposit date:2020-02-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Enhancement of the activity of hydroxylamine oxidoreductase by juglone, plant secondary metabolite.
To Be Published
2RQF
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BU of 2rqf by Molmil
Solution structure of juvenile hormone binding protein from silkworm in complex with JH III
Descriptor: Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
Authors:Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T.
Deposit date:2009-04-27
Release date:2010-05-05
Last modified:2013-06-19
Method:SOLUTION NMR
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
2RS2
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BU of 2rs2 by Molmil
1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex
Descriptor: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1
Authors:Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M.
Deposit date:2011-06-27
Release date:2011-12-28
Method:SOLUTION NMR
Cite:Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
1K2G
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BU of 1k2g by Molmil
Structural basis for the 3'-terminal guanosine recognition by the group I intron
Descriptor: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
6LK7
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BU of 6lk7 by Molmil
crystal structure of Os1348 from Pseudomonas sp. Os17
Descriptor: Nitrile hydratase, alpha chain
Authors:Takeuchi, K, Tsuchiya, W, Fujimoto, Z, Yamada, K, Someya, N, Yamazaki, T.
Deposit date:2019-12-18
Release date:2020-11-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy.
Front Microbiol, 11, 2020
1IY6
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BU of 1iy6 by Molmil
Solution structure of OMSVP3 variant, P14C/N39C
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY5
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BU of 1iy5 by Molmil
Solution structure of wild type OMSVP3
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003

 

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