Author results

1BVE
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HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES
Descriptor:HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T., Hinck, A.P., Wang, Y.-X., Nicholson, L.K., Torchia, D.A., Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C., Domaille, P.J., Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1BVG
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HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE
Descriptor:HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T., Hinck, A.P., Wang, Y.-X., Nicholson, L.K., Torchia, D.A., Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C., Domaille, P.J., Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1JU8
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SOLUTION STRUCTURE OF LEGINSULIN, A PLANT HORMON
Descriptor:Leginsulin
Authors:Yamazaki, T., Takaoka, M., Katoh, E., Hanada, K., Sakita, M., Sakata, K., Nishiuchi, Y., Hirano, H.
Deposit date:2001-08-23
Release date:2003-06-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes
EUR.J.BIOCHEM., 270, 2003
1RCH
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SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES
Descriptor:RIBONUCLEASE HI
Authors:Yamazaki, T., Fujiwara, M., Kato, T., Yamasaki, K., Nagayama, K.
Deposit date:1995-06-23
Release date:1997-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of Ribonuclease Hi from Escherichia Coli
Biol.Pharm.Bull., 23, 2000
1IRZ
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SOLUTION STRUCTURE OF ARR10-B BELONGING TO THE GARP FAMILY OF PLANT MYB-RELATED DNA BINDING MOTIFS OF THE ARABIDOPSIS RESPONSE REGULATORS
Descriptor:ARR10-B
Authors:Yamazaki, T., Katoh, E., Hosoda, K., Mizuno, T.
Deposit date:2001-10-25
Release date:2003-02-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
PLANT CELL, 14, 2003
1C9F
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NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
Descriptor:CASPASE-ACTIVATED DNASE
Authors:Yamazaki, T., Uegaki, K.
Deposit date:1999-08-02
Release date:2000-02-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor.
J.Mol.Biol., 297, 2000
1AYG
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SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor:CYTOCHROME C-552, HEME C
Authors:Hasegawa, J., Yoshida, T., Yamazaki, T., Sambongi, Y., Yu, Y., Igarashi, Y., Kodama, T., Yamazaki, K., Hakusui, H., Kyogoku, Y., Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
1DCJ
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SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION
Descriptor:YHHP PROTEIN
Authors:Katoh, E., Hatta, T., Shindo, H., Mizuno, T., Yamazaki, T.
Deposit date:1999-11-05
Release date:2001-07-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division.
J.Mol.Biol., 304, 2000
3A1Z
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CRYSTAL STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM
Descriptor:Hemolymph juvenile hormone binding protein, ZINC ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.
Deposit date:2009-04-27
Release date:2010-04-28
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP
Plos One, 8, 2013
1F2R
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NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD
Descriptor:CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE
Authors:Otomo, T., Sakahira, H., Uegaki, K., Nagata, S., Yamazaki, T.
Deposit date:2000-05-29
Release date:2000-06-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the heterodimeric complex between CAD domains of CAD and ICAD.
Nat.Struct.Biol., 7, 2000
2RQF
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SOLUTION STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM IN COMPLEX WITH JH III
Descriptor:Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
Authors:Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.
Deposit date:2009-04-27
Release date:2010-05-05
Last modified:2013-06-19
Method:SOLUTION NMR
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
3AOS
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CRYSTAL STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM IN COMPLEX WITH JH II
Descriptor:Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R,3S)-3-ethyl-3-methyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
Authors:Fujimoto, Z., Suzuki, R., Shiotsuki, T., Momma, M., Yamazaki, T.
Deposit date:2010-10-06
Release date:2011-10-12
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
3AOT
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CRYSTAL STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM IN ITS APO FORM
Descriptor:Hemolymph juvenile hormone binding protein, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
Authors:Fujimoto, Z., Suzuki, R., Shiotsuki, T., Momma, M., Yamazaki, T.
Deposit date:2010-10-06
Release date:2011-10-12
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori.
Sci Rep, 1, 2011
1C4L
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SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor:RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3'), RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3')
Authors:Tanaka, Y., Kojima, C., Yamazaki, T., Kodama, T.S., Yasuno, K., Miyashita, S., Ono, A.M., Ono, A.S., Kainosho, M., Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
1K2G
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STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON
Descriptor:5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
Authors:Kitamura, Y., Muto, Y., Watanabe, S., Kim, I., Ito, T., Nishiya, Y., Sakamoto, K., Ohtsuki, T., Kawai, G., Watanabe, K., Hosono, K., Takaku, H., Katoh, E., Yamazaki, T., Inoue, T., Yokoyama, S.
Deposit date:2001-09-27
Release date:2002-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
2RS2
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1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MUSASHI1 RBD1:R(GUAGU) COMPLEX
Descriptor:RNA-binding protein Musashi homolog 1, RNA (5'-R(*GP*UP*AP*GP*U)-3')
Authors:Ohyama, T., Nagata, T., Tsuda, K., Imai, T., Okano, H., Yamazaki, T., Katahira, M.
Deposit date:2011-06-27
Release date:2011-12-28
Method:SOLUTION NMR
Cite:Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
1IY5
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SOLUTION STRUCTURE OF WILD TYPE OMSVP3
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY6
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SOLUTION STRUCTURE OF OMSVP3 VARIANT, P14C/N39C
Descriptor:OMSVP3
Authors:Hemmi, H., Kumazaki, T., Yamazaki, T., Kojima, S., Yoshida, T., Kyogoku, Y., Katsu, M., Yokosawa, H., Miura, K., Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1WFF
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SOLUTION STRUCTURE OF THE ZF-AN1 DOMAIN FROM MOUSE RIKEN CDNA 2810002D23 PROTEIN
Descriptor:RIKEN cDNA 2810002D23 protein, ZINC ION
Authors:Tomizawa, T., Kigawa, T., Izumi, K., Yoshida, M., Yamazaki, T., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-26
Release date:2004-11-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the zf-AN1 domain from mouse RIKEN cDNA 2810002D23 protein
To be Published
1WIF
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THE SOLUTION STRUCTURE OF RSGI RUH-020, A PDZ DOMAIN OF HYPOTHETICAL PROTEIN FROM MOUSE
Descriptor:RIKEN cDNA 4930408O21
Authors:Ohashi, W., Yamazaki, T., Hirota, H., Tomizawa, T., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of RSGI RUH-020, a PDZ domain of hypothetical protein from mouse
To be Published
1BXD
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NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ
Descriptor:PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)), PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.
Deposit date:1998-10-02
Release date:1999-10-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ.
Nature, 396, 1998
1COO
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THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT
Descriptor:RNA POLYMERASE ALPHA SUBUNIT
Authors:Jeon, Y.H., Negishi, T., Shirakawa, M., Yamazaki, T., Fujita, N., Ishihama, A., Kyogoku, Y.
Deposit date:1995-10-09
Release date:1996-03-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the activator contact domain of the RNA polymerase alpha subunit.
Science, 270, 1995
1DOQ
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THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor:RNA POLYMERASE ALPHA SUBUNIT
Authors:Wada, T., Yamazaki, T., Kyogoku, Y.
Deposit date:1999-12-21
Release date:2000-01-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus.
J.Biol.Chem., 275, 2000
1IRF
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:INTERFERON REGULATORY FACTOR-2
Authors:Furui, J., Uegaki, K., Yamazaki, T., Shirakawa, M., Swindells, M.B., Harada, H., Taniguchi, T., Kyogoku, Y.
Deposit date:1997-11-24
Release date:1998-01-28
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
1IRG
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES
Descriptor:INTERFERON REGULATORY FACTOR-2
Authors:Furui, J., Uegaki, K., Yamazaki, T., Shirakawa, M., Swindells, M.B., Harada, H., Taniguchi, T., Kyogoku, Y.
Deposit date:1997-11-25
Release date:1998-03-18
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
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