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3LLH
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BU of 3llh by Molmil
Crystal structure of the first dsRBD of TAR RNA-binding protein 2
Descriptor: MALONATE ION, RISC-loading complex subunit TARBP2
Authors:Yamashita, S, Kawazoe, M, Takemoto, C, Sekine, S, Wakiyama, M, Yokoyama, S.
Deposit date:2010-01-29
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The structures of dsRBDs of human TRBP
To be Published
3QRA
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BU of 3qra by Molmil
The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Attachment invasion locus protein
Authors:Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K.
Deposit date:2011-02-17
Release date:2011-11-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structural Insights into Ail-Mediated Adhesion in Yersinia pestis.
Structure, 19, 2011
3QRC
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BU of 3qrc by Molmil
The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis, in complex with the heparin analogue sucrose octasulfate
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, Attachment invasion locus protein
Authors:Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K.
Deposit date:2011-02-17
Release date:2011-11-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.852 Å)
Cite:Structural Insights into Ail-Mediated Adhesion in Yersinia pestis.
Structure, 19, 2011
4EN6
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BU of 4en6 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactose
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
Deposit date:2012-04-12
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN7
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BU of 4en7 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
Deposit date:2012-04-12
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN8
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BU of 4en8 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactose
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
Deposit date:2012-04-12
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN9
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BU of 4en9 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactosamine
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
Deposit date:2012-04-12
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4WC6
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BU of 4wc6 by Molmil
Structure of tRNA-processing enzyme complex 4
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC3
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BU of 4wc3 by Molmil
Structure of tRNA-processing enzyme complex 1
Descriptor: Poly A polymerase, RNA 76-mer
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WBZ
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BU of 4wbz by Molmil
tRNA-processing enzyme (apo form 2)
Descriptor: Poly A polymerase
Authors:Yamashita, S, Tomtia, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0A
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BU of 4x0a by Molmil
Structure of tRNA-processing enzyme complex 6
Descriptor: Poly A polymerase, RNA (73-MER)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-11-21
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.505 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0B
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BU of 4x0b by Molmil
Structure of tRNA-processing enzyme complex 7
Descriptor: Poly A polymerase, RNA (77-MER)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-11-21
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC5
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BU of 4wc5 by Molmil
Structure of tRNA-processing enzyme complex 3
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WBY
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BU of 4wby by Molmil
tRNA-processing enzyme (apo form I)
Descriptor: GLYCEROL, Poly A polymerase, SULFATE ION
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC4
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BU of 4wc4 by Molmil
tRNA-processing enzyme complex 2
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
Authors:Yamashita, S, Tomita, K.
Deposit date:2014-09-04
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.501 Å)
Cite:Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
8IDF
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BU of 8idf by Molmil
Crystal structure of human TUT1 complexed with U6 snRNA
Descriptor: RNA (53-MER), Speckle targeted PIP5K1A-regulated poly(A) polymerase, ZINC ION
Authors:Yamashita, S, Tomita, K.
Deposit date:2023-02-13
Release date:2023-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanism of U6 snRNA oligouridylation by human TUT1.
Nat Commun, 14, 2023
5HC9
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BU of 5hc9 by Molmil
Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA
Descriptor: MAGNESIUM ION, tRNA nucleotidyl transferase-related protein, tRNAphe
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-01-04
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure, 24, 2016
5WU4
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BU of 5wu4 by Molmil
Crystal structure of human Tut1 bound with MgATP, form II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU3
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BU of 5wu3 by Molmil
Crystal structure of human Tut1 bound with MgUTP, form II
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU1
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BU of 5wu1 by Molmil
Crystal structure of apo human Tut1, form I
Descriptor: CHLORIDE ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU6
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BU of 5wu6 by Molmil
Crystal structure of apo human Tut1, form IV
Descriptor: MAGNESIUM ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.209 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017

 

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