Author results

1DHY
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KKS102 BPHC ENZYME
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T., Sugiyama, K., Narita, H., Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
1EIL
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, SULFATE ION, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-26
Release date:2001-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIR
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION, BIPHENYL-2,3-DIOL
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1HRE
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SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor:HEREGULIN ALPHA
Authors:Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1HRF
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SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4
Descriptor:HEREGULIN ALPHA
Authors:Nagata, K., Kohda, D., Hatanaka, H., Ichikawa, S., Inagaki, F.
Deposit date:1994-07-21
Release date:1994-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4.
EMBO J., 13, 1994
1I5P
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INSECTICIDAL CRYSTAL PROTEIN CRY2AA
Descriptor:PESTICIDIAL CRYSTAL PROTEIN CRY2AA
Authors:Morse, R.J., Stroud, R.M., Yamamoto, T.
Deposit date:2001-02-28
Release date:2001-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Cry2Aa suggests an unexpected receptor binding epitope.
Structure, 9, 2001
1V5E
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CRYSTAL STRUCTURE OF PYRUVATE OXIDASE CONTAINING FAD, FROM AEROCOCCUS VIRIDANS
Descriptor:Pyruvate oxidase, SULFATE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2003-11-22
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans
To be Published
1V5F
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CRYSTAL STRUCTURE OF PYRUVATE OXIDASE COMPLEXED WITH FAD AND TPP, FROM AEROCOCCUS VIRIDANS
Descriptor:Pyruvate oxidase, MAGNESIUM ION, SULFATE ION, ...
Authors:Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2003-11-22
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.
Acta Crystallogr.,Sect.F, 63, 2007
1V5G
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CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE BETWEEN PYRUVATE OXIDASE CONTAINING FAD AND TPP, AND SUBSTRATE PYRUVATE
Descriptor:Pyruvate oxidase, MAGNESIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2003-11-22
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.
Acta Crystallogr.,Sect.F, 63, 2007
1VAX
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CRYSTAL STRUCTURE OF URICASE FROM ARTHROBACTER GLOBIFORMIS
Descriptor:Uric acid oxidase
Authors:Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2004-02-19
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal Structure of Uricase from Arthrobacter globiformis
To be Published
1VAY
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CRYSTAL STRUCTURE OF URICASE FROM ARTHROBACTER GLOBIFORMIS WITH INHIBITOR 8-AZAXANTHINE
Descriptor:Uric acid oxidase, 8-AZAXANTHINE
Authors:Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2004-02-19
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structure of Uricase from Arthrobacter Globiformis Complexed with an inhibitor 8-Azaxanthine
To be Published
1X0R
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THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1
Descriptor:Probable peroxiredoxin, 1,2-ETHANEDIOL
Authors:Nakamura, T., Yamamoto, T., Inoue, T., Matsumura, H., Kobayashi, A., Hagihara, Y., Uegaki, K., Ataka, M., Kai, Y., Ishikawa, K.
Deposit date:2005-03-28
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1
Proteins, 62, 2006
2CW7
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW8
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION, GLYCEROL
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CZR
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CRYSTAL STRUCTURE OF TBP-INTERACTING PROTEIN (TK-TIP26) AND IMPLICATIONS FOR ITS INHIBITION MECHANISM OF THE INTERACTION BETWEEN TBP AND TATA-DNA
Descriptor:TBP-interacting protein, ZINC ION, GLYCEROL
Authors:Yamamoto, T., Matsuda, T., Inoue, T., Matsumura, H., Morikawa, M., Kanaya, S., Kai, Y.
Deposit date:2005-07-15
Release date:2006-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Protein Sci., 15, 2006
2D5R
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CRYSTAL STRUCTURE OF A TOB-HCAF1 COMPLEX
Descriptor:CCR4-NOT transcription complex subunit 7, Tob1 protein
Authors:Horiuchi, M., Suzuki, N.N., Muroya, N., Takahasi, K., Nishida, M., Yoshida, Y., Ikematsu, N., Nakamura, T., Kawamura-Tsuzuku, J., Yamamoto, T., Inagaki, F.
Deposit date:2005-11-04
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.
J.Biol.Chem., 284, 2009
2DJI
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CRYSTAL STRUCTURE OF PYRUVATE OXIDASE FROM AEROCOCCUS VIRIDANS CONTAINING FAD
Descriptor:Pyruvate oxidase, SULFATE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Juan, E.C.M., Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Deposit date:2006-04-03
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis.
Acta Crystallogr.,Sect.F, 63, 2007
2DSN
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CRYSTAL STRUCTURE OF T1 LIPASE
Descriptor:Thermostable lipase, ZINC ION, CALCIUM ION, ...
Authors:Matsumura, H., Kai, Y.
Deposit date:2006-07-03
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase
Proteins, 70, 2007
2DV6
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CRYSTAL STRUCTURE OF NITRITE REDUCTASE FROM HYPHOMICROBIUM DENITRIFICANS
Descriptor:Nitrite reductase, COPPER (II) ION, POTASSIUM ION
Authors:Nojiri, M., Xie, Y., Yamamoto, T., Inoue, T., Suzuki, S., Kai, Y.
Deposit date:2006-07-28
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of a hexameric copper-containing nitrite reductase.
Proc.Natl.Acad.Sci.USA, 104, 2007
2E2G
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CRYSTAL STRUCTURE OF ARCHAEAL PEROXIREDOXIN, THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1 (PRE-OXIDATION FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
Deposit date:2006-11-13
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2E2M
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CRYSTAL STRUCTURE OF ARCHAEAL PEROXIREDOXIN, THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1 (SULFINIC ACID FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
Deposit date:2006-11-14
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2EB2
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CRYSTAL STRUCTURE OF MUTATED EGFR KINASE DOMAIN (G719S)
Descriptor:Epidermal growth factor receptor
Authors:Yoshikawa, S., Kukimoto-Niino, M., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Senba, K., Yamamoto, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-06
Release date:2008-02-12
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
2EB3
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CRYSTAL STRUCTURE OF MUTATED EGFR KINASE DOMAIN (L858R) IN COMPLEX WITH AMPPNP
Descriptor:Epidermal growth factor receptor, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yoshikawa, S., Kukimoto-Niino, M., Shirouzu, M., Senba, K., Yamamoto, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-06
Release date:2008-02-12
Last modified:2012-03-07
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 2012
2KUP
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SOLUTION STRUCTURE OF THE COMPLEX OF THE PTB DOMAIN OF SNT-2 AND 19-RESIDUE PEPTIDE (AA 1571-1589) OF HALK
Descriptor:Fibroblast growth factor receptor substrate 3, 19-residue peptide from ALK tyrosine kinase receptor
Authors:Li, H., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-02-24
Release date:2010-05-26
Last modified:2014-02-12
Method:SOLUTION NMR
Cite:Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2
J.Struct.Funct.Genom., 11, 2010
2KUQ
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SOLUTION STRUCTURE OF THE CHIMERA OF THE PTB DOMAIN OF SNT-2 AND 19-RESIDUE PEPTIDE (AA 1571-1589) OF HALK
Descriptor:Fibroblast growth factor receptor substrate 3, LINKER, 19-residue peptide from ALK tyrosine kinase receptor
Authors:Li, H., Koshiba, S., Tomizawa, T., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-02-24
Release date:2010-05-26
Last modified:2014-02-12
Method:SOLUTION NMR
Cite:Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2
J.Struct.Funct.Genom., 11, 2010