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2D17
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SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV-1 DIMERIZATION INITIATION SITE
Descriptor:5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
4YYL
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PHENOLIC ACID DERIVATIVE BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE SUBUNIT PA ENDONUCLEASE
Descriptor:Polymerase acidic protein, 2-(4-fluorophenoxy)-1-(2,3,4-trihydroxyphenyl)ethanone, MANGANESE (II) ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.
Deposit date:2015-03-24
Release date:2015-04-29
Last modified:2015-09-09
Method:X-RAY DIFFRACTION (1.905 Å)
Cite:Structural and computational study on inhibitory compounds for endonuclease activity of influenza virus polymerase
Bioorg.Med.Chem., 23, 2015
4ZHZ
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ENDONUCLEASE INHIBITOR BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION WITH EXPELLING ONE OF THE METAL IONS IN THE ACTIVE SITE
Descriptor:Polymerase acidic protein, 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde, MANGANESE (II) ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.
Deposit date:2015-04-27
Release date:2015-05-13
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
4ZI0
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ENDONUCLEASE INHIBITOR BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION WITHOUT A CHELATION TO THE METAL IONS IN THE ACTIVE SITE
Descriptor:Polymerase acidic protein, SULFATE ION, MANGANESE (II) ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.
Deposit date:2015-04-27
Release date:2015-05-13
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
4ZQQ
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APO FORM OF INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION
Descriptor:Polymerase acidic protein,Polymerase acidic protein, MANGANESE (II) ION, SULFATE ION
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.
Deposit date:2015-05-11
Release date:2015-06-03
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit.
Biochemistry, 55, 2016
5FDD
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ENDONUCLEASE INHIBITOR 1 BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION AT PH 7.0
Descriptor:Polymerase acidic protein,Polymerase acidic protein, 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde, MANGANESE (II) ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
Deposit date:2015-12-16
Release date:2015-12-30
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (2.506 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
5FDG
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ENDONUCLEASE INHIBITOR 3 BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION AT PH 7.0
Descriptor:Polymerase acidic protein, SULFATE ION, MANGANESE (II) ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
Deposit date:2015-12-16
Release date:2015-12-30
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
5I13
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ENDONUCLEASE INHIBITOR 2 BOUND TO INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION AT PH 7.0
Descriptor:Polymerase acidic protein, MANGANESE (II) ION, SULFATE ION, ...
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
Deposit date:2016-02-05
Release date:2016-02-17
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
3KKM
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CRYSTAL STRUCTURE OF H-RAS T35S IN COMPLEX WITH GPPNHP
Descriptor:GTPase HRas, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Muraoka, S., Shima, F., Liao, J., Ijiri, Y., Matsumoto, K., Ye, M., Inoue, T., Kataoka, T.
Deposit date:2009-11-06
Release date:2010-06-16
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKN
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CRYSTAL STRUCTURE OF H-RAS T35S IN COMPLEX WITH GPPNHP
Descriptor:GTPase HRas, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION
Authors:Muraoka, S., Shima, F., Liao, J., Ijiri, Y., Matsumoto, K., Ye, M., Inoue, T., Kataoka, T.
Deposit date:2009-11-06
Release date:2010-06-16
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKO
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CRYSTAL STRUCTURE OF M-RAS P40D/D41E/L51R IN COMPLEX WITH GPPNHP
Descriptor:Ras-related protein M-Ras, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Muraoka, S., Shima, F., Liao, J., Ijiri, Y., Matsumoto, K., Ye, M., Inoue, T., Kataoka, T.
Deposit date:2009-11-06
Release date:2010-06-16
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKP
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CRYSTAL STRUCTURE OF M-RAS P40D IN COMPLEX WITH GPPNHP
Descriptor:Ras-related protein M-Ras, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION
Authors:Muraoka, S., Shima, F., Liao, J., Ijiri, Y., Matsumoto, K., Ye, M., Inoue, T., Kataoka, T.
Deposit date:2009-11-06
Release date:2010-06-16
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKQ
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CRYSTAL STRUCTURE OF M-RAS P40D IN COMPLEX WITH GDP
Descriptor:Ras-related protein M-Ras, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Muraoka, S., Shima, F., Liao, J., Ijiri, Y., Matsumoto, K., Ye, M., Inoue, T., Kataoka, T.
Deposit date:2009-11-06
Release date:2010-06-16
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
2RDD
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X-RAY CRYSTAL STRUCTURE OF ACRB IN COMPLEX WITH A NOVEL TRANSMEMBRANE HELIX.
Descriptor:Acriflavine resistance protein B, UPF0092 membrane protein yajC, (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID
Authors:Tornroth-Horsefield, S., Gourdon, P., Horsefield, R., Neutze, R.
Deposit date:2007-09-22
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist.
Structure, 15, 2007
5JHT
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APO FORM OF INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION CRYSTALLIZED WITH POTASSIUM SODIUM TARTRATE
Descriptor:Polymerase acidic protein, MANGANESE (II) ION, L(+)-TARTARIC ACID
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
Deposit date:2016-04-21
Release date:2016-05-11
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Influence of Precipitants on Molecular Arrangements and Space Groups of Protein Crystals
Cryst.Growth Des., 17, 2017
5JHV
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APO FORM OF INFLUENZA STRAIN H1N1 POLYMERASE ACIDIC SUBUNIT N-TERMINAL REGION CRYSTALLIZED WITH POLYETHYLENE GLYCOL 8000
Descriptor:Polymerase acidic protein, MANGANESE (II) ION
Authors:Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
Deposit date:2016-04-21
Release date:2016-05-11
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (2.749 Å)
Cite:Influence of Precipitants on Molecular Arrangements and Space Groups of Protein Crystals
Cryst.Growth Des., 17, 2017
1VBG
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PYRUVATE PHOSPHATE DIKINASE FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBH
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PYRUVATE PHOSPHATE DIKINASE WITH BOUND MG-PEP FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION, ...
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005