Author results

5FLX
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MAMMALIAN 40S HCV-IRES COMPLEX
Descriptor:18S RRNA, 40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, ...
Authors:Yamamoto, H., Collier, M., Loerke, J., Ismer, J., Schmidt, A., Hilal, T., Sprink, T., Yamamoto, K., Mielke, T., Burger, J., Shaikh, T.R., Dabrowski, M., Hildebrand, P.W., Scheerer, P., Spahn, C.M.T.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015
1WR8
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1421 FROM PYROCOCCUS HORIKOSHII.
Descriptor:Phosphoglycolate phosphatase, ACETATE ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-13
Release date:2004-10-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a haloacid dehalogenase superfamily phosphatase PH1421 from Pyrococcus horikoshii OT3: oligomeric state and thermoadaptation mechanism.
Acta Crystallogr.,Sect.D, 64, 2008
1YYA
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CRYSTAL STRUCTURE OF TT0473, PUTATIVE TRIOSEPHOSPHATE ISOMERASE FROM THERMUS THERMOPHILUS HB8
Descriptor:triosephosphate isomerase, SODIUM ION, PHOSPHATE ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-24
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
To be Published
1ZJJ
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1952 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:hypothetical protein PH1952, MAGNESIUM ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-29
Release date:2006-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of hypothetical protein PH1952 from Pyrococcus horikoshii OT3
To be Published
1ZZG
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN TT0462 FROM THERMUS THERMOPHILUS HB8
Descriptor:glucose-6-phosphate isomerase
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-14
Release date:2006-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8
To be Published
2GJU
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1004 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:252aa long hypothetical protein, SODIUM ION, PHOSPHATE ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-31
Release date:2006-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3
To be published
2HR8
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CRYSTAL STRUCTURE OF PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, PLATINUM (II) ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yamamoto, H., Taketa, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-20
Release date:2007-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2HUN
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH0414 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:336aa long hypothetical dTDP-glucose 4,6-dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-26
Release date:2007-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of hypothetical protein PH0414 from Pyrococcus horikoshii OT3
To be Published
2HVB
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN PH1083 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Superoxide reductase, FE (III) ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-28
Release date:2007-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3
To be Published
2P5C
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CRYSTAL STRUCTURE OF PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, GLYCEROL
Authors:Yamamoto, H., Taketa, M., Ono, N., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-15
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6C
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN AQ_2013 FROM AQUIFEX AEOLICUS VF5.
Descriptor:aq_2013 protein, PHOSPHATE ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-17
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5
To be Published
2P6D
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CRYSTAL STRUCTURE OF PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yamamoto, H., Taketa, M., Morikawa, Y., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-17
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6H
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN APE1520 FROM AEROPYRUM PERNIX K1
Descriptor:Hypothetical protein, SULFATE ION
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-18
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of hypothetical protein APE1520 from Aeropyrum pernix K1
To be Published
2PA6
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CRYSTAL STRUCTURE OF MJ0232 FROM METHANOCOCCUS JANNASCHII
Descriptor:Enolase
Authors:Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of MJ0232 from Methanococcus jannaschii
To be Published
4UJC
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MAMMALIAN 80S HCV-IRES INITIATION COMPLEX WITH EIF5B POST-LIKE STATE
Descriptor:TRNA, EIF5B, HCV-IRES, ...
Authors:Yamamoto, H., Unbehaun, A., Loerke, J., Behrmann, E., Marianne, C., Burger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2014-06-18
Release date:2014-07-30
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structure of the Mammalian 80S Initiation Complex with Initiation Factor 5B on Hcv-Ires RNA.
Nat.Struct.Mol.Biol., 21, 2014
4UJD
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MAMMALIAN 80S HCV-IRES INITIATION COMPLEX WITH EIF5B PRE-LIKE STATE
Descriptor:28S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ...
Authors:Yamamoto, H., Unbehaun, A., Loerke, J., Behrmann, E., Marianne, C., Burger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2014-06-18
Release date:2014-07-30
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
Nat.Struct.Mol.Biol., 21, 2014
1WSP
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CRYSTAL STRUCTURE OF AXIN DIX DOMAIN
Descriptor:Axin 1 protein, MERCURY (II) ION, BENZOIC ACID
Authors:Shibata, N., Hanamura, T., Yamamoto, R., Ueda, Y., Yamamoto, H., Kikuchi, A., Higuchi, Y.
Deposit date:2004-11-08
Release date:2006-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of axin dix domain
to be published
3JCJ
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STRUCTURES OF RIBOSOME-BOUND INITIATION FACTOR 2 REVEAL THE MECHANISM OF SUBUNIT ASSOCIATION
Descriptor:5S ribosomal RNA, 30S ribosomal protein S18, 30S ribosomal protein S21, ...
Authors:Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2015-12-18
Release date:2016-03-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
3JCN
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STRUCTURES OF RIBOSOME-BOUND INITIATION FACTOR 2 REVEAL THE MECHANISM OF SUBUNIT ASSOCIATION: INITIATION COMPLEX I
Descriptor:50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, ...
Authors:Sprink, T., Ramrath, D.J.F., Yamamoto, H., Yamamoto, K., Loerke, J., Ismer, J., Hildebrand, P.W., Scheerer, P., Buerger, J., Mielke, T., Spahn, C.M.T.
Deposit date:2016-01-04
Release date:2016-03-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
3VX6
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD
Descriptor:E1
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
3VX7
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD-ATG10 COMPLEX
Descriptor:E1, E2
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
1BWV
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ACTIVATED RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH THE REACTION INTERMEDIATE ANALOGUE 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE
Descriptor:PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE), MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Sugawara, H., Yamamoto, H., Shibata, N., Inoue, T., Miyake, C., Yokota, A., Kai, Y.
Deposit date:1998-09-29
Release date:1999-09-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita.
J.Biol.Chem., 274, 1999
1PRU
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRV
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
Descriptor:PURINE REPRESSOR
Authors:Nagadoi, A., Morikawa, S., Nakamura, H., Enari, M., Kobayashi, K., Yamamoto, H., Sampei, G., Mizobuchi, K., Schumacher, M.A., Brennan, R.G., Nishimura, Y.
Deposit date:1995-05-08
Release date:1996-03-08
Last modified:2012-02-22
Method:SOLUTION NMR
Cite:Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1WOK
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CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF HUMAN POLY(ADP-RIBOSE) POLYMERASE COMPLEXED WITH A QUINOXALINE-TYPE INHIBITOR
Descriptor:Poly [ADP-ribose] polymerase-1, 3-(4-CHLOROPHENYL)QUINOXALINE-5-CARBOXAMIDE
Authors:Iwashita, A., Hattori, K., Yamamoto, H., Ishida, J., Kido, Y., Kamijo, K., Murano, K., Miyake, H., Kinoshita, T., Warizaya, M., Ohkubo, M., Matsuoka, N., Mutoh, S.
Deposit date:2004-08-20
Release date:2005-03-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Discovery of quinazolinone and quinoxaline derivatives as potent and selective poly(ADP-ribose) polymerase-1/2 inhibitors.
Febs Lett., 579, 2005
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