Author results

2LPU
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SOLUTION STRUCTURES OF KMATG10
Descriptor:KmAtg10
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-02-19
Release date:2012-08-01
Method:SOLUTION NMR
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
3VQI
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG5
Descriptor:Atg5, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION
Authors:Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.
Deposit date:2012-03-24
Release date:2012-08-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
3VX6
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD
Descriptor:E1
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
3VX7
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CRYSTAL STRUCTURE OF KLUYVEROMYCES MARXIANUS ATG7NTD-ATG10 COMPLEX
Descriptor:E1, E2
Authors:Yamaguchi, M., Matoba, K., Sawada, R., Fujioka, Y., Nakatogawa, H., Yamamoto, H., Kobashigawa, Y., Hoshida, H., Akada, R., Ohsumi, Y., Noda, N.N., Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
To be Published
4J16
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSHYDROGENASE HETEROTRIMERIC COMPLEX OF THE ALPHA1 SUBUNIT DIMER WITH THE NADP BINDING DOMAIN (DOMAIN III) OF THE BETA SUBUNIT
Descriptor:NAD/NADP transhydrogenase alpha subunit 1, NAD(P) transhydrogenase subunit beta, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yamaguchi, M., Leung, J., Schurig Briccio, L.A., Gennis, R.B., Stout, C.D.
Deposit date:2013-02-01
Release date:2014-02-05
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structure analysis of Thermus thermophilus transhydrogenase soluble domains
To be Published
4J1T
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSHYDROGENASE HETEROTRIMERIC COMPLEX OF THE ALPHA1 SUBUNIT DIMER WITH THE NADP BINDING DOMAIN (DOMAIN III) OF THE BETA SUBUNIT IN P2(1)
Descriptor:NAD/NADP transhydrogenase alpha subunit 1, NAD(P) transhydrogenase subunit beta, GLYCEROL, ...
Authors:Yamaguchi, M., Leung, J., Schurig Briccio, L.A., Gennis, R.B., Stout, C.D.
Deposit date:2013-02-02
Release date:2014-02-05
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure analysis of Thermus thermophilus transhydrogenase soluble domains
To be Published
4RG6
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CRYSTAL STRUCTURE OF APC3-APC16 COMPLEX
Descriptor:Cell division cycle protein 27 homolog, Anaphase-promoting complex subunit 16
Authors:Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.
Deposit date:2014-09-29
Release date:2014-12-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of an APC3-APC16 Complex: Insights into Assembly of the Anaphase-Promoting Complex/Cyclosome.
J.Mol.Biol., 427, 2015
4RG7
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CRYSTAL STRUCTURE OF APC3
Descriptor:Cell division cycle protein 27 homolog
Authors:Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.
Deposit date:2014-09-29
Release date:2014-12-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (4.25 Å)
Cite:Structure of an APC3-APC16 Complex: Insights into Assembly of the Anaphase-Promoting Complex/Cyclosome.
J.Mol.Biol., 427, 2015
4RG9
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CRYSTAL STRUCTURE OF APC3-APC16 COMPLEX (SELENOMETHIONINE DERIVATIVE)
Descriptor:Cell division cycle protein 27 homolog, Anaphase-promoting complex subunit 16
Authors:Yamaguchi, M., Yu, S., Miller, D.J., Schulman, B.A.
Deposit date:2014-09-29
Release date:2014-12-24
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of an APC3-APC16 Complex: Insights into Assembly of the Anaphase-Promoting Complex/Cyclosome.
J.Mol.Biol., 427, 2015
5KHU
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MODEL OF HUMAN ANAPHASE-PROMOTING COMPLEX/CYCLOSOME (APC15 DELETION MUTANT), IN COMPLEX WITH THE MITOTIC CHECKPOINT COMPLEX (APC/C-CDC20-MCC) BASED ON CRYO EM DATA AT 4.8 ANGSTROM RESOLUTION
Descriptor:Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Cell division cycle protein 23 homolog, ...
Authors:Yamaguchi, M., VanderLinden, R., Dube, P., Stark, H., Schulman, B.
Deposit date:2016-06-15
Release date:2016-09-07
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.
Mol.Cell, 63, 2016
5YEC
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CRYSTAL STRUCTURE OF ATG7CTD-ATG8-MGATP COMPLEX IN FORM II
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, Autophagy-related protein 8, ZINC ION, ...
Authors:Yamaguchi, M., Satoo, K., Noda, N.N.
Deposit date:2017-09-16
Release date:2018-03-28
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
J. Mol. Biol., 430, 2018
5KHR
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MODEL OF HUMAN ANAPHASE-PROMOTING COMPLEX/CYCLOSOME COMPLEX (APC15 DELETION MUTANT) IN COMPLEX WITH THE E2 UBE2C/UBCH10 POISED FOR UBIQUITIN LIGATION TO SUBSTRATE (APC/C-CDC20-SUBSTRATE-UBE2C)
Descriptor:Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Cell division cycle protein 23 homolog, ...
Authors:VanderLinden, R., Yamaguchi, M., Dube, P., Haselbach, D., Stark, H., Schulman, B.A.
Deposit date:2016-06-15
Release date:2016-08-24
Last modified:2016-08-31
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.
Mol.Cell, 63, 2016
1L7D
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CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN I WITHOUT BOUND NAD(H)
Descriptor:nicotinamide nucleotide Transhydrogenase, subunit alpha 1
Authors:Prasad, G.S., Wahlberg, M., Sridhar, V., Yamaguchi, M., Hatefi, Y., Stout, C.D.
Deposit date:2002-03-14
Release date:2002-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal Structures of Transhydrogenase Domain I with and without Bound NADH
Biochemistry, 41, 2002
1L7E
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CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN I WITH BOUND NADH
Descriptor:nicotinamide nucleotide Transhydrogenase, subunit alpha 1, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Prasad, G.S., Wahlberg, M., Sridhar, V., Yamaguchi, M., Hatefi, Y., Stout, C.D.
Deposit date:2002-03-14
Release date:2002-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Transhydrogenase Domain I with and without Bound NADH
Biochemistry, 41, 2002
2KWC
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THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8
Descriptor:Autophagy-related protein 8
Authors:Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.
Deposit date:2010-04-05
Release date:2010-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
3WUZ
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CRYSTAL STRUCTURE OF THE IG V-SET DOMAIN OF HUMAN PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR ALPHA
Descriptor:Paired immunoglobulin-like type 2 receptor alpha, ISOPROPYL ALCOHOL, CITRIC ACID
Authors:Kuroki, K., Wang, J., Ose, T., Yamaguchi, M., Tabata, S., Maita, N., Nakamura, S., Kajikawa, M., Kogure, A., Satoh, T., Arase, H., Maenaka, K.
Deposit date:2014-05-10
Release date:2014-06-11
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILR alpha
Proc.Natl.Acad.Sci.USA, 111, 2014
3WV0
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O-GLYCAN ATTACHED TO HERPES SIMPLEX VIRUS TYPE 1 GLYCOPROTEIN GB IS RECOGNIZED BY THE IG V-SET DOMAIN OF HUMAN PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR ALPHA
Descriptor:Paired immunoglobulin-like type 2 receptor alpha, Envelope glycoprotein B, SULFATE ION, ...
Authors:Kuroki, K., Wang, J., Ose, T., Yamaguchi, M., Tabata, S., Maita, N., Nakamura, S., Kajikawa, M., Kogure, A., Satoh, T., Arase, H., Maenaka, K.
Deposit date:2014-05-10
Release date:2014-06-11
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILR alpha
Proc.Natl.Acad.Sci.USA, 111, 2014
1D4O
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CRYSTAL STRUCTURE OF TRANSHYDROGENASE DOMAIN III AT 1.2 ANGSTROMS RESOLUTION
Descriptor:NADP(H) TRANSHYDROGENASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Prasad, G.S., Sridhar, V., Yamaguchi, M., Hatefi, Y., Stout, C.D.
Deposit date:1999-10-04
Release date:2000-01-20
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Crystal structure of transhydrogenase domain III at 1.2 A resolution.
Nat.Struct.Biol., 6, 1999
1PNO
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CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN III BOUND TO NADP
Descriptor:NAD(P) transhydrogenase subunit beta, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sundaresan, V., Yamaguchi, M., Chartron, J., Stout, C.D.
Deposit date:2003-06-12
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States
Biochemistry, 42, 2003
1PNQ
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CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN III BOUND TO NADPH
Descriptor:NAD(P) transhydrogenase subunit beta, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Sundaresan, V., Yamaguchi, M., Chartron, J., Stout, C.D.
Deposit date:2003-06-12
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States
Biochemistry, 42, 2003
1XLT
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CRYSTAL STRUCTURE OF TRANSHYDROGENASE [(DOMAIN I)2:DOMAIN III] HETEROTRIMER COMPLEX
Descriptor:NAD(P) transhydrogenase subunit alpha part 1, NAD(P) transhydrogenase subunit beta, SUCROSE, ...
Authors:Sundaresan, V., Chartron, J., Yamaguchi, M., Stout, C.D.
Deposit date:2004-09-30
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Conformational Diversity in NAD(H) and Transhydrogenase Nicotinamide Nucleotide Binding Domains
J.Mol.Biol., 346, 2005
4IZH
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CRYSTAL STRUCTURE OF THE ALPHA1 DIMER OF THERMUS THERMOPHILUS TRANSHYDROGENASE IN P6
Descriptor:NAD/NADP transhydrogenase alpha subunit 1, GLYCEROL
Authors:Stout, C.D., Yamaguchi, M., Leung, J.
Deposit date:2013-01-29
Release date:2014-01-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analysis of Thermus thermophilus transhydrogenase soluble domains
To be Published
4IZI
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CRYSTAL STRUCTURE OF THE ALPHA1 DIMER OF THERMUS THERMOPHILUS TRANSHYDROGENASE IN P4(3)
Descriptor:NAD/NADP transhydrogenase alpha subunit 1, GLYCEROL
Authors:Stout, C.D., Yamaguchi, M., Leung, J.
Deposit date:2013-01-30
Release date:2014-02-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure analysis of Thermus thermophilus transhydrogenase soluble domains
To be Published
4O93
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILIS TRANSHYDROGEANSE DOMAIN II DIMER
Descriptor:NAD(P) transhydrogenase subunit alpha 2, NAD(P) transhydrogenase subunit beta, MERCURY (II) ION
Authors:Leung, J.H., Yamaguchi, M., Moeller, A., Schurig-Briccio, L.A., Gennis, R.B., Potter, C.S., Carragher, B., Stout, C.D.
Deposit date:2013-12-31
Release date:2014-12-31
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural biology. Division of labor in transhydrogenase by alternating proton translocation and hydride transfer.
Science, 347, 2015
4O9P
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILIS TRANSHYDROGEANSE DOMAIN II DIMER SEMET DERIVATIVE
Descriptor:NAD(P) transhydrogenase subunit alpha 2, NAD(P) transhydrogenase subunit beta
Authors:Leung, J.H., Yamaguchi, M., Moeller, A., Schurig-Briccio, L.A., Gennis, R.B., Potter, C.S., Carragher, B., Stout, C.D.
Deposit date:2014-01-02
Release date:2014-06-11
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural biology. Division of labor in transhydrogenase by alternating proton translocation and hydride transfer.
Science, 347, 2015
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