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1GLV
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BU of 1glv by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION
Descriptor: GLUTATHIONE SYNTHASE
Authors:Yamaguchi, H, Kato, H, Tanaka, T, Katsube, Y.
Deposit date:1993-03-12
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 A resolution.
J.Mol.Biol., 229, 1993
3LCK
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BU of 3lck by Molmil
THE KINASE DOMAIN OF HUMAN LYMPHOCYTE KINASE (LCK), ACTIVATED FORM (AUTO-PHOSPHORYLATED ON TYR394)
Descriptor: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE, SULFATE ION
Authors:Yamaguchi, H, Hendrickson, W.A.
Deposit date:1997-04-08
Release date:1997-12-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation.
Nature, 384, 1996
2RT8
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BU of 2rt8 by Molmil
Structure of metallo-dna in solution
Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
Authors:Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y.
Deposit date:2013-06-18
Release date:2014-03-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 42, 2014
2F2U
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BU of 2f2u by Molmil
crystal structure of the Rho-kinase kinase domain
Descriptor: 5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE, Rho-associated protein kinase 2
Authors:Yamaguchi, H, Hakoshima, T.
Deposit date:2005-11-18
Release date:2006-04-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular mechanism for the regulation of rho-kinase by dimerization and its inhibition by fasudil
Structure, 14, 2006
2H9V
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BU of 2h9v by Molmil
Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y27632
Descriptor: (R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE, Rho-associated protein kinase 2
Authors:Yamaguchi, H, Miwa, Y, Kasa, M, Kitano, K, Amano, M, Kaibuchi, K, Hakoshima, T.
Deposit date:2006-06-12
Release date:2006-12-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y-27632
J.Biochem.(Tokyo), 140, 2006
8JPW
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BU of 8jpw by Molmil
Crystal Structure of Single-chain L-Glutamate Oxidase Mutant from Streptomyces sp. X-119-6
Descriptor: 2-OXOGLUTARIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, L-glutamate oxidase, ...
Authors:Yamaguchi, H, Takahashi, K, Tatsumi, M, Tagami, U, Mizukoshi, T, Miyano, H, Sugiki, M.
Deposit date:2023-06-13
Release date:2023-08-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Development of a novel single-chain l-glutamate oxidase from Streptomyces sp. X-119-6 by inserting flexible linkers
Enzyme.Microb.Technol., 170, 2023
1IAJ
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BU of 1iaj by Molmil
CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (APO)
Descriptor: TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ZINC ION
Authors:Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
1IAH
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BU of 1iah by Molmil
CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (ADP-MG COMPLEX)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
1IA9
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BU of 1ia9 by Molmil
CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (AMPPNP COMPLEX)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ...
Authors:Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
5ZBC
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BU of 5zbc by Molmil
Crystal structure of Se-Met tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5ZBD
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BU of 5zbd by Molmil
Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
6ACF
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BU of 6acf by Molmil
structure of leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM
Descriptor: Leucine dehydrogenase
Authors:Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
6ACH
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BU of 6ach by Molmil
Structure of NAD+-bound leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM
Descriptor: Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
1X1D
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BU of 1x1d by Molmil
Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn-bacteriopheophorbide d
Descriptor: CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yamaguchi, H, Wada, K, Fukuyama, K.
Deposit date:2005-04-04
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1B
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BU of 1x1b by Molmil
Crystal structure of BchU complexed with S-adenosyl-L-homocysteine
Descriptor: CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yamaguchi, H, Wada, K, Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X19
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BU of 1x19 by Molmil
Crystal structure of BchU involved in bacteriochlorophyll c biosynthesis
Descriptor: CrtF-related protein, SULFATE ION
Authors:Yamaguchi, H, Wada, K, Fukuyama, K.
Deposit date:2005-04-02
Release date:2006-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1C
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BU of 1x1c by Molmil
Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn2+
Descriptor: CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yamaguchi, H, Wada, K, Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1A
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BU of 1x1a by Molmil
Crystal structure of BchU complexed with S-adenosyl-L-methionine
Descriptor: CrtF-related protein, GLYCEROL, S-ADENOSYLMETHIONINE, ...
Authors:Yamaguchi, H, Wada, K, Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1YSE
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BU of 1yse by Molmil
Solution structure of the MAR-binding domain of SATB1
Descriptor: DNA-binding protein SATB1
Authors:Yamasaki, K, Yamaguchi, H.
Deposit date:2005-02-08
Release date:2006-01-03
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation
J.Biol.Chem., 281, 2006
1GSH
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BU of 1gsh by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
Descriptor: GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K, Kato, H, Yamaguchi, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-05-16
Release date:1996-07-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
8X35
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BU of 8x35 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form A)
Descriptor: 1,2-ETHANEDIOL, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 2024
8X36
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BU of 8x36 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form B)
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, ...
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 2024
8X37
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BU of 8x37 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP
Descriptor: DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, Neryl-diphosphate synthase 1
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 2024
1AVK
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BU of 1avk by Molmil
CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE
Descriptor: AMINE OXIDASE
Authors:Wilce, M.C.J, Guss, J.M, Freeman, H.C, Tanizawa, K, Yamaguchi, H.
Deposit date:1997-09-16
Release date:1998-03-18
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone.
Biochemistry, 36, 1997
2GLT
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BU of 2glt by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor: GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K, Yamaguchi, H, Kato, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996

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