Author results

1GLV
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THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION
Descriptor:GLUTATHIONE SYNTHASE
Authors:Yamaguchi, H., Kato, H., Tanaka, T., Katsube, Y.
Deposit date:1993-03-12
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 A resolution.
J.Mol.Biol., 229, 1993
1IA9
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CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (AMPPNP COMPLEX)
Descriptor:TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ZINC ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Yamaguchi, H., Matsushita, M., Nairn, A.C., Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
1IAH
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CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (ADP-MG COMPLEX)
Descriptor:TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ZINC ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Yamaguchi, H., Matsushita, M., Nairn, A.C., Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
1IAJ
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CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (APO)
Descriptor:TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ZINC ION
Authors:Yamaguchi, H., Matsushita, M., Nairn, A.C., Kuriyan, J.
Deposit date:2001-03-22
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.
Mol.Cell, 7, 2001
2F2U
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CRYSTAL STRUCTURE OF THE RHO-KINASE KINASE DOMAIN
Descriptor:Rho-associated protein kinase 2, 5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE
Authors:Yamaguchi, H., Hakoshima, T.
Deposit date:2005-11-18
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular mechanism for the regulation of rho-kinase by dimerization and its inhibition by fasudil
Structure, 14, 2006
2H9V
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STRUCTURAL BASIS FOR INDUCED-FIT BINDING OF RHO-KINASE TO THE INHIBITOR Y27632
Descriptor:Rho-associated protein kinase 2, (R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE
Authors:Yamaguchi, H., Miwa, Y., Kasa, M., Kitano, K., Amano, M., Kaibuchi, K., Hakoshima, T.
Deposit date:2006-06-12
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y-27632
J.Biochem.(Tokyo), 140, 2006
2RT8
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STRUCTURE OF METALLO-DNA IN SOLUTION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
Authors:Yamaguchi, H., Sebera, J., Kondo, J., Oda, S., Komuro, T., Kawamura, T., Dairaku, T., Kondo, Y., Okamoto, I., Ono, A., Burda, J.V., Kojima, C., Sychrovsky, V., Tanaka, Y.
Deposit date:2013-06-18
Release date:2014-03-05
Method:SOLUTION NMR
Cite:The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res., 2013
3LCK
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THE KINASE DOMAIN OF HUMAN LYMPHOCYTE KINASE (LCK), ACTIVATED FORM (AUTO-PHOSPHORYLATED ON TYR394)
Descriptor:PROTO-ONCOGENE TYROSINE-PROTEIN KINASE, SULFATE ION
Authors:Yamaguchi, H., Hendrickson, W.A.
Deposit date:1997-04-08
Release date:1997-12-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation.
Nature, 384, 1996
5ZBC
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CRYSTAL STRUCTURE OF SE-MET TRYPTOPHAN OXIDASE (C395A MUTANT) FROM CHROMOBACTERIUM VIOLACEUM
Descriptor:Flavin-dependent L-tryptophan oxidase VioA, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5ZBD
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CRYSTAL STRUCTURE OF TRYPTOPHAN OXIDASE (C395A MUTANT) FROM CHROMOBACTERIUM VIOLACEUM
Descriptor:Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yamaguchi, H., Tatsumi, M., Takahashi, K., Tagami, U., Sugiki, M., Kashiwagi, T., Okazaki, S., Mizukoshi, T., Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
6ACF
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STRUCTURE OF LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
6ACH
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STRUCTURE OF NAD+-BOUND LEUCINE DEHYDROGENASE FROM GEOBACILLUS STEAROTHERMOPHILUS BY CRYO-EM
Descriptor:Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamaguchi, H., Kamegawa, A., Nakata, K., Kashiwagi, T., Mizukoshi, T., Fujiyoshi, Y., Tani, K.
Deposit date:2018-07-26
Release date:2018-12-26
Last modified:2019-02-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy
J. Struct. Biol., 205, 2019
1X19
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CRYSTAL STRUCTURE OF BCHU INVOLVED IN BACTERIOCHLOROPHYLL C BIOSYNTHESIS
Descriptor:CrtF-related protein, SULFATE ION
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-02
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1A
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-METHIONINE
Descriptor:CrtF-related protein, SULFATE ION, S-ADENOSYLMETHIONINE, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1B
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE
Descriptor:CrtF-related protein, SULFATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1C
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND ZN2+
Descriptor:CrtF-related protein, ZINC ION, SULFATE ION, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1X1D
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CRYSTAL STRUCTURE OF BCHU COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND ZN-BACTERIOPHEOPHORBIDE D
Descriptor:CrtF-related protein, ZINC ION, SULFATE ION, ...
Authors:Yamaguchi, H., Wada, K., Fukuyama, K.
Deposit date:2005-04-04
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism.
J.Mol.Biol., 360, 2006
1YSE
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SOLUTION STRUCTURE OF THE MAR-BINDING DOMAIN OF SATB1
Descriptor:DNA-binding protein SATB1
Authors:Yamasaki, K., Yamaguchi, H.
Deposit date:2005-02-08
Release date:2006-01-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation
J.Biol.Chem., 281, 2006
1GSH
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Kato, H., Yamaguchi, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1996-07-11
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
2GLT
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Yamaguchi, H., Kato, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
1OCC
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STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
Descriptor:CYTOCHROME C OXIDASE, COPPER (II) ION, MAGNESIUM ION, ...
Authors:Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yoshikawa, S.
Deposit date:1996-04-18
Release date:1996-12-07
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.
Science, 272, 1996
1UI7
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SITE-DIRECTED MUTAGENESIS OF HIS433 INVOLVED IN BINDING OF COPPER ION IN ARTHROBACTER GLOBIFORMIS AMINE OXIDASE
Descriptor:Phenylethylamine oxidase, COPPER (II) ION
Authors:Matsunami, H., Okajima, T., Hirota, S., Yamaguchi, H., Hori, H., Kuroda, S., Tanizawa, K.
Deposit date:2003-07-15
Release date:2004-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
1UI8
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SITE-DIRECTED MUTAGENESIS OF HIS592 INVOLVED IN BINDING OF COPPER ION IN ARTHROBACTER GLOBIFORMIS AMINE OXIDASE
Descriptor:Phenylethylamine oxidase, COPPER (II) ION
Authors:Matsunami, H., Okajima, T., Hirota, S., Yamaguchi, H., Hori, H., Kuroda, S., Tanizawa, K.
Deposit date:2003-07-15
Release date:2004-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
1V3R
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:Nitrogen regulatory protein P-II
Authors:Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Yamaguchi, H., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
J.Struct.Biol., 149, 2005
1IUG
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THE CRYSTAL STRUCTURE OF ASPARTATE AMINOTRANSFERASE WHICH BELONGS TO SUBGROUP IV FROM THERMUS THERMOPHILUS
Descriptor:putative aspartate aminotransferase, PHOSPHATE ION
Authors:Katsura, Y., Shirouzu, M., Yamaguchi, H., Ishitani, R., Nureki, O., Kuramitsu, S., Hayashi, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-04
Release date:2003-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.
Proteins, 55, 2004