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2DFX
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CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF COLICIN E5 COMPLEXED WITH ITS INHIBITOR
Descriptor:Colicin-E5, Colicin-E5 immunity protein
Authors:Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2006-03-06
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DJH
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5
Descriptor:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
Authors:Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2006-04-03
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
1JVS
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; A TARGET ENZYME FOR ANTIMALARIAL DRUGS
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yajima, S., Nonaka, T., Kuzuyama, T., Seto, H., Ohsawa, K.
Deposit date:2001-08-31
Release date:2002-10-09
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding.
J.Biochem.(Tokyo), 131, 2002
1T1R
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, [(ISOQUINOLIN-1-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID
Authors:Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
Deposit date:2004-04-17
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
1T1S
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, MAGNESIUM ION, ...
Authors:Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
Deposit date:2004-04-17
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
Descriptor:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2004-05-27
Release date:2005-03-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1TFO
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBITOR PROTEIN
Descriptor:Colicin D, Colicin D immunity protein
Authors:Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2004-05-27
Release date:2005-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
2EGH
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE COMPLEXED WITH A MAGNESIUM ION, NADPH AND FOSMIDOMYCIN
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, MAGNESIUM ION, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Yajima, S., Hara, K., Iino, D., Sasaki, Y., Kuzuyama, T., Seto, H.
Deposit date:2007-03-01
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase in a quaternary complex with a magnesium ion, NADPH and the antimalarial drug fosmidomycin
Acta Crystallogr.,Sect.F, 63, 2007
3VJ7
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 R33Q MUTANT
Descriptor:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
Authors:Yajima, S., Inoue, S., Fushinobu, S., Ogawa, T., Hidaka, M., Masaki, H.
Deposit date:2011-10-13
Release date:2011-11-02
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
2JLN
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STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER
Descriptor:MHP1, SODIUM ION, MERCURY (II) ION
Authors:Weyand, S., Shimamura, T., Yajima, S., Suzuki, S., Mirza, O., Krusong, K., Carpenter, E.P., Rutherford, N.G., Hadden, J.M., O'Reilly, J., Ma, P., Saidijam, M., Patching, S.G., Hope, R.J., Norbertczak, H.T., Roach, P.C.J., Iwata, S., Henderson, P.J.F., Cameron, A.D.
Deposit date:2008-09-11
Release date:2008-10-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and Molecular Mechanism of a Nucleobase-Cation-Symport-1 Family Transporter.
Science, 322, 2008
3AO9
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CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF SEQUENCE-SPECIFIC RIBONUCLEASE
Descriptor:Colicin-E5, CADMIUM ION
Authors:Inoue, S., Fushinobu, S., Ogawa, T., Hidaka, M., Masaki, H., Yajima, S.
Deposit date:2010-09-22
Release date:2011-09-28
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
3VUO
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CRYSTAL STRUCTURE OF NONTOXIC NONHEMAGGLUTININ SUBCOMPONENT (NTNHA) FROM CLOSTRIDIUM BOTULINUM SEROTYPE D STRAIN 4947
Descriptor:NTNHA
Authors:Sagane, Y., Miyashita, S.-I., Miyata, K., Matsumoto, T., Inui, K., Hayashi, S., Suzuki, T., Hasegawa, K., Yajima, S., Yamano, A., Niwa, K., Watanabe, T.
Deposit date:2012-07-03
Release date:2012-09-19
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Small-angle X-ray scattering reveals structural dynamics of the botulinum neurotoxin associating protein, nontoxic nonhemagglutinin
Biochem.Biophys.Res.Commun., 425, 2012
5B2H
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CRYSTAL STRUCTURE OF HA33 FROM CLOSTRIDIUM BOTULINUM SEROTYPE C STRAIN YOICHI
Descriptor:HA-33, TRIETHYLENE GLYCOL
Authors:Akiyama, T., Hayashi, S., Matsumoto, T., Hasegawa, K., Yamano, A., Suzuki, T., Niwa, K., Watanabe, T., Sagane, Y., Yajima, S.
Deposit date:2016-01-15
Release date:2016-06-15
Last modified:2016-07-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformational divergence in the HA-33/HA-17 trimer of serotype C and D botulinum toxin complex
Biochem.Biophys.Res.Commun., 476, 2016
5H1A
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CRYSTAL STRUCTURE OF AN ICLR HOMOLOG FROM MICROBACTERIUM SP. STRAIN HM58-2
Descriptor:IclR transcription factor homolog, PHOSPHATE ION
Authors:Akiyama, T., Yamada, Y., Takaya, N., Ito, S., Sasaki, Y., Yajima, S.
Deposit date:2016-10-08
Release date:2017-01-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an IclR homologue from Microbacterium sp. strain HM58-2.
Acta Crystallogr F Struct Biol Commun, 73, 2017
6AA8
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COENZYMEA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM COMPLEXED WITH NAD+
Descriptor:3-hydroxybutyryl-CoA dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Takenoya, M., Taguchi, S., Yajima, S.
Deposit date:2018-07-17
Release date:2018-11-07
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6ACQ
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CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE FROM CLOSTRIDIUM ACETOBUTYLICUM, APO FORM
Descriptor:3-hydroxybutyryl-CoA dehydrogenase
Authors:Takenoya, M., Taguchi, S., Yajima, S.
Deposit date:2018-07-27
Release date:2018-11-07
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.
Acta Crystallogr F Struct Biol Commun, 74, 2018
2DGA
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CRYSTAL STRUCTURE OF HEXAMERIC BETA-GLUCOSIDASE IN WHEAT
Descriptor:Beta-glucosidase, SULFATE ION, GLYCEROL
Authors:Sue, M., Yamazaki, K., Miyamoto, T., Yajima, S.
Deposit date:2006-03-10
Release date:2006-07-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular and Structural Characterization of Hexameric beta-D-Glucosidases in Wheat and Rye.
Plant Physiol., 141, 2006
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-02
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
Descriptor:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
Authors:Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
3AIQ
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH AN AGLYCONE DIMBOA
Descriptor:Beta-glucosidase, 2,4-DIHYDROXY-7-(METHYLOXY)-2H-1,4-BENZOXAZIN-3(4H)-ONE
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-02-23
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIR
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH 2-DEOXY-2-FLUOROGLUCOSIDE AND DINITROPHENOL
Descriptor:Beta-glucosidase, 2-deoxy-2-fluoro-alpha-D-glucopyranose, 2,4-DINITROPHENOL
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-03-16
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIS
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CRYSTAL STRUCTURE OF A MUTANT BETA-GLUCOSIDASE IN WHEAT COMPLEXED WITH DIMBOA-GLC
Descriptor:Beta-glucosidase, BETA-D-GLUCOSE, (2S)-2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-03-16
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIU
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN RYE
Descriptor:Beta-glucosidase, SULFATE ION, GLYCEROL
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-02-23
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIV
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN RYE COMPLEXED WITH AN AGLYCONE DIMBOA
Descriptor:Beta-glucosidase, 2,4-DIHYDROXY-7-(METHYLOXY)-2H-1,4-BENZOXAZIN-3(4H)-ONE
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-02-23
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
3AIW
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE IN RYE COMPLEXED WITH 2-DEOXY-2-FLUOROGLUCOSIDE AND DINITROPHENOL
Descriptor:Beta-glucosidase, 2,4-DINITROPHENOL, 2-deoxy-2-fluoro-alpha-D-glucopyranose
Authors:Sue, M., Nakamura, C., Miyamoto, T., Yajima, S.
Deposit date:2010-05-18
Release date:2011-02-23
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Active-site architecture of benzoxazinone-glucoside beta-D-glucosidases in Triticeae
Plant Sci., 180, 2011
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