Author results

2X72
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CRYSTAL STRUCTURE OF THE CONSTITUTIVELY ACTIVE E113Q,D2C,D282C RHODOPSIN MUTANT WITH BOUND GALPHACT PEPTIDE.
Descriptor:RHODOPSIN, GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, ...
Authors:Standfuss, J., Edwards, P.C., Dantona, A., Fransen, M., Xie, G., Oprian, D.D., Schertler, G.F.X.
Deposit date:2010-02-22
Release date:2011-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structural Basis of Agonist Induced Activation in Constitutively Active Rhodopsin
Nature, 471, 2011
1VE6
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CRYSTAL STRUCTURE OF AN ACYLPEPTIDE HYDROLASE/ESTERASE FROM AEROPYRUM PERNIX K1
Descriptor:Acylamino-acid-releasing enzyme, B-OCTYLGLUCOSIDE, GLYCEROL
Authors:Bartlam, M., Wang, G., Gao, R., Yang, H., Zhao, X., Xie, G., Cao, S., Feng, Y., Rao, Z.
Deposit date:2004-03-27
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
STRUCTURE, 12, 2004
1VE7
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CRYSTAL STRUCTURE OF AN ACYLPEPTIDE HYDROLASE/ESTERASE FROM AEROPYRUM PERNIX K1 IN COMPLEX WITH P-NITROPHENYL PHOSPHATE
Descriptor:Acylamino-acid-releasing enzyme, 4-NITROPHENYL PHOSPHATE, GLYCEROL
Authors:Bartlam, M., Wang, G., Gao, R., Yang, H., Zhao, X., Xie, G., Cao, S., Feng, Y., Rao, Z.
Deposit date:2004-03-27
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
STRUCTURE, 12, 2004
1BPS
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MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA
Descriptor:DNA (5'-D(*GP*GP*TP*CP*(BAP)AP*CP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3'), 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
Authors:Schwartz, J.S., Rice, J.S., Luxon, B.A., Sayer, J.M., Xie, G., Yeh, H.J.C., Liu, X., Jerina, D.M., Gorenstein, D.G.
Deposit date:1998-08-06
Release date:1998-08-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modified deoxyadenosine.
Biochemistry, 36, 1997
1FYY
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HPRT GENE MUTATION HOTSPOT WITH A BPDE2(10R) ADDUCT
Descriptor:HPRT DNA WITH BENZO[A]PYRENE-ADDUCTED DA7, 5'-D(*TP*GP*CP*CP*CP*TP*TP*GP*AP*CP*TP*A)-3', 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
Authors:Volk, D.E., Rice, J.S., Luxon, B.A., Yeh, H.J.C., Liang, C., Xie, G., Sayer, J.M., Jerina, D.M., Gorenstein, D.G.
Deposit date:2000-10-03
Release date:2000-12-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex.
Biochemistry, 39, 2000
2J4Y
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CRYSTAL STRUCTURE OF A RHODOPSIN STABILIZING MUTANT EXPRESSED IN MAMMALIAN CELLS
Descriptor:RHODOPSIN, RETINAL, N-ACETYL-D-GLUCOSAMINE
Authors:Standfuss, J., Xie, G., Edwards, P.C., Burghammer, M., Oprian, D.D., Schertler, G.F.X.
Deposit date:2006-09-07
Release date:2007-09-25
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structure of a Thermally Stable Rhodopsin Mutant.
J.Mol.Biol., 372, 2007
5JDB
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BINDING SPECIFICITY OF P[8] VP8* PROTEINS OF ROTAVIRUS VACCINE STRAINS WITH HISTO-BLOOD GROUP ANTIGENS
Descriptor:Outer capsid protein VP4
Authors:Sun, X., Guo, N., Li, D., Zhou, Y., Jin, M., Xie, G., Pang, L., Zhang, Q., Cao, Y., Duan, Z.
Deposit date:2016-04-16
Release date:2016-07-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Binding specificity of P[8] VP8* proteins of rotavirus vaccine strains with histo-blood group antigens.
Virology, 495, 2016
6AKJ
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THE CRYSTAL STRUCTURE OF EMC COMPLEX
Descriptor:Enhancer of rudimentary homolog,YTH domain-containing protein mmi1 fusion protein, SULFATE ION
Authors:Li, F.
Deposit date:2018-09-01
Release date:2019-02-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing.
Nat Commun, 10, 2019
4A4M
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CRYSTAL STRUCTURE OF THE LIGHT-ACTIVATED CONSTITUTIVELY ACTIVE N2C, M257Y,D282C RHODOPSIN MUTANT IN COMPLEX WITH A PEPTIDE RESEMBLING THE C-TERMINUS OF THE GALPHA-PROTEIN SUBUNIT (GACT)
Descriptor:RHODOPSIN, GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-3, RETINAL, ...
Authors:Deupi, X., Edwards, P., Singhal, A., Nickle, B., Oprian, D.D., Schertler, G.F.X., Standfuss, J.
Deposit date:2011-10-17
Release date:2012-01-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Stabilized G Protein Binding Site in the Structure of Constitutively Active Metarhodopsin-II.
Proc.Natl.Acad.Sci.USA, 109, 2012
4KSJ
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CRYSTAL STRUCTURE OF THE OTU DOMAIN OF GUMBY/FAM105B AT 1.6 ANGSTROM
Descriptor:Protein FAM105B, BETA-MERCAPTOETHANOL, GLYCEROL
Authors:Ceccarelli, D.F., Juang, Y.-C., Sicheri, F.
Deposit date:2013-05-17
Release date:2013-06-05
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
Nature, 498, 2013
4KSK
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GUMBY/FAM105B IN COMPLEX WITH UBIQUITIN
Descriptor:Protein FAM105B, Polyubiquitin-C, SULFATE ION
Authors:Ceccarelli, D.F., Juang, Y.-C., Sicheri, F.
Deposit date:2013-05-17
Release date:2013-06-05
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
Nature, 498, 2013
4KSL
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GUMBY/FAM105B IN COMPLEX WITH LINEAR DI-UBIQUITIN
Descriptor:Protein FAM105B, Polyubiquitin-C
Authors:Juang, Y.-C., Ceccarelli, D.F., Sicheri, F.
Deposit date:2013-05-17
Release date:2013-06-05
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
Nature, 498, 2013
5GJ6
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FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF P[19] ROTAVIRUS VP8* INTERACTION WITH HISTO-BLOOD GROUP ANTIGENS
Descriptor:Outer capsid protein VP4, SULFATE ION
Authors:Sun, X., Duan, Z.
Deposit date:2016-06-28
Release date:2016-09-07
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.388 Å)
Cite:Functional and Structural Characterization of P[19] Rotavirus VP8* Interaction with Histo-blood Group Antigens.
J. Virol., 90, 2016
5ZI6
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THE RING DOMAIN STRUCTURE OF MEX-3C
Descriptor:RNA-binding E3 ubiquitin-protein ligase MEX3C, ZINC ION
Authors:Moududee, S.A., Tang, Y.
Deposit date:2018-03-14
Release date:2018-10-24
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional characterization of hMEX-3C Ring finger domain as an E3 ubiquitin ligase
Protein Sci., 27, 2018
6DA6
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CRYSTAL STRUCTURE OF THE TTND DECARBOXYLASE FROM THE TAUTOMYCETIN BIOSYNTHESIS PATHWAY OF STREPTOMYCES GRISEOCHROMOGENES, APO FORM AT 2.6 A RESOLUTION (P212121)
Descriptor:UbiD-like decarboxylase, MAGNESIUM ION, GLYCEROL, ...
Authors:Han, L., Rudolf, J.D., Chang, C.-Y., Miller, M.D., Soman, J., Phillips Jr., G.N., Shen, B., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2018-05-01
Release date:2018-10-03
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Biochemical and Structural Characterization of TtnD, a Prenylated FMN-Dependent Decarboxylase from the Tautomycetin Biosynthetic Pathway.
ACS Chem. Biol., 13, 2018
6DA7
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CRYSTAL STRUCTURE OF THE TTND DECARBOXYLASE FROM THE TAUTOMYCETIN BIOSYNTHESIS PATHWAY OF STREPTOMYCES GRISEOCHROMOGENES WITH APO FORM AT 1.83 A RESOLUTION (I222)
Descriptor:UbiD-like decarboxylase, SODIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Han, L., Rudolf, J.D., Chang, C.-Y., Miller, M.D., Soman, J., Phillips Jr., G.N., Shen, B., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2018-05-01
Release date:2018-10-03
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Biochemical and Structural Characterization of TtnD, a Prenylated FMN-Dependent Decarboxylase from the Tautomycetin Biosynthetic Pathway.
ACS Chem. Biol., 13, 2018
6DA9
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CRYSTAL STRUCTURE OF THE TTND DECARBOXYLASE FROM THE TAUTOMYCETIN BIOSYNTHESIS PATHWAY OF STREPTOMYCES GRISEOCHROMOGENES WITH FMN BOUND AT 2.05 A RESOLUTION
Descriptor:UbiD-like decarboxylase, FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, ...
Authors:Han, L., Rudolf, J.D., Chang, C.-Y., Miller, M.D., Soman, J., Xu, W., Phillips Jr., G.N., Shen, B., Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2018-05-01
Release date:2018-10-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Biochemical and Structural Characterization of TtnD, a Prenylated FMN-Dependent Decarboxylase from the Tautomycetin Biosynthetic Pathway.
ACS Chem. Biol., 13, 2018
2HU5
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BINDING OF INHIBITORS BY ACYLAMINOACYL-PEPTIDASE
Descriptor:Acylamino-acid-releasing enzyme, GLYCINE, PHENYLALANINE, ...
Authors:Kiss, A.L., Hornung, B., Radi, K., Gengeliczki, Z., Sztaray, B., Harmat, V., Polgar, L.
Deposit date:2006-07-26
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Acylaminoacyl Peptidase from Aeropyrum pernix K1 Thought to Be an Exopeptidase Displays Endopeptidase Activity
J.Mol.Biol., 368, 2007
2HU7
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BINDING OF INHIBITORS BY ACYLAMINOACYL PEPTIDASE
Descriptor:Acylamino-acid-releasing enzyme, ACETYL GROUP, PHENYLALANINE, ...
Authors:Kiss, A.L., Hornung, B., Radi, K., Gengeliczki, Z., Sztaray, B., Harmat, V., Polgar, L.
Deposit date:2006-07-26
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Acylaminoacyl Peptidase from Aeropyrum pernix K1 Thought to Be an Exopeptidase Displays Endopeptidase Activity
J.Mol.Biol., 368, 2007
2HU8
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BINDING OF INHIBITORS BY ACYLAMINOACYL PEPTIDASE
Descriptor:Acylamino-acid-releasing enzyme, 2-AMINOBENZOIC ACID, GLYCINE, ...
Authors:Kiss, A.L., Hornung, B., Radi, K., Gengeliczki, Z., Sztaray, B., Harmat, V., Polgar, L.
Deposit date:2006-07-26
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Acylaminoacyl Peptidase from Aeropyrum pernix K1 Thought to Be an Exopeptidase Displays Endopeptidase Activity
J.Mol.Biol., 368, 2007
3C9M
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STRUCTURE OF A MUTANT BOVINE RHODOPSIN IN HEXAGONAL CRYSTAL FORM
Descriptor:Rhodopsin, N-ACETYL-D-GLUCOSAMINE, ACETYL GROUP, ...
Authors:Stenkamp, R.E.
Deposit date:2008-02-16
Release date:2008-08-05
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Alternative models for two crystal structures of bovine rhodopsin.
Acta Crystallogr.,Sect.D, 64, 2008