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8SBS
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BU of 8sbs by Molmil
Fumarate C - R126A in (3-(N-morpholino)propanesulfonic acid) at pH 7.5
Descriptor: Fumarate hydratase class II
Authors:Weaver, T.M, May, J, Bhattacharyya, B.
Deposit date:2023-04-04
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Fumarate C - R126A in (3-(N-morpholino)propanesulfonic acid) at pH 7.5
To Be Published
6X74
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BU of 6x74 by Molmil
Rev1 Mg2+-facilitated Product Complex with no monophosphates
Descriptor: CHLORIDE ION, DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*)-3'), DNA (5'-D(P*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X71
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BU of 6x71 by Molmil
Rev1 Mg2+-facilitated Intermediate complex with reactant dCTP and product dCMP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*(MG))-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
3FY3
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BU of 3fy3 by Molmil
Crystal structure of truncated hemolysin A from P. mirabilis
Descriptor: Hemolysin
Authors:Weaver, T.M, Thompson, J.R, Bailey, L.J, Wawrzyn, G.T, Hocking, J.M, Howard, D.R.
Deposit date:2009-01-21
Release date:2009-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional studies of truncated hemolysin A from Proteus mirabilis.
J.Biol.Chem., 284, 2009
6X72
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BU of 6x72 by Molmil
Rev1 Mg2+-facilitated Product Complex with two monophosphates
Descriptor: DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*)-3'), DNA repair protein REV1, ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X76
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BU of 6x76 by Molmil
Rev1 L325G Mn2+-facilitated Product Complex with second dCTP bound
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X75
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BU of 6x75 by Molmil
Rev1 Mn2+-facilitated Product Complex with second dCTP bound
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X6Z
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BU of 6x6z by Molmil
Rev1 Ternary Complex with dCTP and Ca2+
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X73
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BU of 6x73 by Molmil
Rev1 Mg2+-facilitated Product Complex with one monophosphate
Descriptor: AMMONIUM ION, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X70
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BU of 6x70 by Molmil
Rev1-DNA Binary Complex
Descriptor: DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*G)-3'), DNA repair protein REV1, ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X77
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BU of 6x77 by Molmil
Rev1 R518A Ternary Complex with dCTP and Ca2+
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
7U50
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BU of 7u50 by Molmil
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Descriptor: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
6PZL
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BU of 6pzl by Molmil
P. mirabilis hemolysin A mutant - Q125A
Descriptor: GLYCEROL, Hemolysin
Authors:Weaver, T.M, Novak, W.R.P, Bhattacharyya, B.
Deposit date:2019-08-01
Release date:2020-08-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Structure of the HpmA265 Q125A variant
To Be Published
6PYK
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BU of 6pyk by Molmil
P. mirabilis hemolysin A mutant - F80L
Descriptor: Hemolysin
Authors:Weaver, T.M, Novak, W.R.P, Bhattacharyya, B.
Deposit date:2019-07-30
Release date:2020-08-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of truncated hemolysin A variant F80L
To Be Published
6Q0P
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BU of 6q0p by Molmil
P. mirabilis hemolysin A mutant - Y134S
Descriptor: Hemolysin
Authors:Weaver, T.M, Novak, W.R.P.
Deposit date:2019-08-02
Release date:2020-08-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.542 Å)
Cite:Structure of the HpmA265 Q125A variant
To Be Published
7U53
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BU of 7u53 by Molmil
Nucleosome core particle with AP-site at SHL0
Descriptor: DNA (144-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U51
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BU of 7u51 by Molmil
Nucleosome core particle with AP-site at SHL-6
Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U52
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BU of 7u52 by Molmil
nucleosome core particle with AP-site at SHL-6.5
Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
6NZC
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BU of 6nzc by Molmil
Crystal structure of E. coli fumarase C N326A variant with closed SS Loop at 1.40 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
6NZA
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BU of 6nza by Molmil
Crystal structure of E. coli fumarase C K324A variant with closed SS Loop at 1.41 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.406 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
6NZB
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BU of 6nzb by Molmil
Crystal structure of E. coli fumarase C S318A variant with closed SS Loop at 1.37 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
7T1A
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BU of 7t1a by Molmil
Rev1 Ternary Complex with dATP and Ca2+
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2021-12-01
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.
Nat Commun, 13, 2022
7T19
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BU of 7t19 by Molmil
Rev1 Ternary Complex with dGTP and Ca2+
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2021-12-01
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.
Nat Commun, 13, 2022
7T18
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BU of 7t18 by Molmil
Rev1 Ternary Complex with dTTP and Ca2+
Descriptor: CALCIUM ION, DNA (5'-D(*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*G)-3'), ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2021-12-01
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.
Nat Commun, 13, 2022
7T1B
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BU of 7t1b by Molmil
Rev1 Ternary Complex with rCTP and Ca2+
Descriptor: CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Freudenthal, B.D, Weaver, T.M.
Deposit date:2021-12-01
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.
Nat Commun, 13, 2022

 

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