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5GU7
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BU of 5gu7 by Molmil
Crystal Structure of human ERp44 form II
Descriptor: Endoplasmic reticulum resident protein 44
Authors:Watanabe, S, Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GU6
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BU of 5gu6 by Molmil
Crystal structure of Human ERp44 form I
Descriptor: CHLORIDE ION, Endoplasmic reticulum resident protein 44
Authors:Watanabe, S, Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XWM
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BU of 5xwm by Molmil
human ERp44 zinc-bound form
Descriptor: CHLORIDE ION, Endoplasmic reticulum resident protein 44, ZINC ION
Authors:Watanabe, S, Harayama, M, Inaba, K.
Deposit date:2017-06-30
Release date:2019-01-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Zinc regulates ERp44-dependent protein quality control in the early secretory pathway.
Nat Commun, 10, 2019
5AUQ
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BU of 5auq by Molmil
Crystal structure of ATPase-type HypB in the nucleotide free state
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUP
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BU of 5aup by Molmil
Crystal structure of the HypAB complex
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUN
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BU of 5aun by Molmil
Crystal structure of the HypAB-Ni complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUO
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BU of 5auo by Molmil
Crystal structure of the HypAB-Ni complex (AMPPCP)
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
3VYT
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BU of 3vyt by Molmil
Crystal structure of the HypC-HypD-HypE complex (form I inward)
Descriptor: CHLORIDE ION, Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYR
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BU of 3vyr by Molmil
Crystal structure of the HypC-HypD complex
Descriptor: CITRIC ACID, Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYS
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BU of 3vys by Molmil
Crystal structure of the HypC-HypD-HypE complex (form I)
Descriptor: Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYU
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BU of 3vyu by Molmil
Crystal structure of the HypC-HypD-HypE complex (form II)
Descriptor: Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
2Z1E
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BU of 2z1e by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
Descriptor: Hydrogenase expression/formation protein HypE
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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BU of 2z1c by Molmil
Crystal structure of HypC from Thermococcus kodakaraensis KOD1
Descriptor: GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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BU of 2z1f by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (inward form)
Descriptor: Hydrogenase expression/formation protein HypE
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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BU of 2z1d by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
Descriptor: Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2ZHG
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BU of 2zhg by Molmil
Crystal structure of SoxR in complex with DNA
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Watanabe, S, Kita, A, Kobayashi, K, Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZHH
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BU of 2zhh by Molmil
Crystal structure of SoxR
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, FE2/S2 (INORGANIC) CLUSTER, Redox-sensitive transcriptional activator soxR
Authors:Watanabe, S, Kita, A, Kobayashi, K, Miki, K.
Deposit date:2008-02-05
Release date:2008-03-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
3A43
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BU of 3a43 by Molmil
Crystal structure of HypA
Descriptor: Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A44
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BU of 3a44 by Molmil
Crystal structure of HypA in the dimeric form
Descriptor: Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
2D2F
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BU of 2d2f by Molmil
Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Watanabe, S, Kita, A, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
2D2E
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BU of 2d2e by Molmil
Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, GLYCEROL, SufC protein
Authors:Watanabe, S, Kita, A, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
7WWX
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BU of 7wwx by Molmil
Crystal structure of Herbaspirillum huttiense L-arabinose 1-dehydrogenase (NAD bound form)
Descriptor: DI(HYDROXYETHYL)ETHER, NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family), NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Matsubara, R, Yoshiwara, K, Watanabe, Y, Watanabe, S.
Deposit date:2022-02-14
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of L-arabinose 1-dehydrogenase as a short-chain reductase/dehydrogenase protein.
Biochem.Biophys.Res.Commun., 604, 2022
7C0D
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BU of 7c0d by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2020-09-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0E
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BU of 7c0e by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Ono, A, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
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BU of 7c0c by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Nobuchi, R, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020

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