Author results

3A8U
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CRYSTAL STRUCTURE OF OMEGA-AMINO ACID:PYRUVATE AMINOTRANSFERASE
Descriptor:Omega-amino acid--pyruvate aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Watanabe, N., Sakabe, N., Sakabe, K., Sasaki, K.
Deposit date:2009-10-11
Release date:2009-11-10
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of omega-Amino Acid:Pyruvate Aminotransferase
to be published
1WLT
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CRYSTAL STRUCTURE OF DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE HOMOLOGUE FROM SULFOLOBUS TOKODAII
Descriptor:176aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase
Authors:Watanabe, N., Sakai, N., Zilian, Z., Kawarabayasi, Y., Tanaka, I.
Deposit date:2004-06-29
Release date:2005-07-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of dTDP-4-dehydrorhamnose 3,5-epimerase homologue
to be published
2E52
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CRYSTAL STRUCTURAL ANALYSIS OF HINDIII RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA AT 2.0 ANGSTROM RESOLUTION
Descriptor:Type II restriction enzyme HindIII, DNA (5'-D(*DGP*DCP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DGP*DGP*DC)-3'), GLYCEROL, ...
Authors:Watanabe, N., Sato, C., Tanaka, I.
Deposit date:2006-12-18
Release date:2007-12-18
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations
Acta Crystallogr.,Sect.D, 65, 2009
2Z1Z
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CRYSTAL STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH L-MALATE ION
Descriptor:LL-diaminopimelate aminotransferase, D-MALATE, PYRIDOXAL-5'-PHOSPHATE
Authors:Watanabe, N., Cherney, M.M., van Belkum, M.J., Marcus, S.L., Flegel, M.D., Clay, M.D., Deyholos, M.K., Vederas, J.C., James, M.N.G.
Deposit date:2007-05-16
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana: a recently discovered enzyme in the biosynthesis of L-lysine by plants and Chlamydia
J.Mol.Biol., 371, 2007
2Z20
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CRYSTAL STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA
Descriptor:LL-diaminopimelate aminotransferase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Watanabe, N., Cherney, M.M., van Belkum, M.J., Marcus, S.L., Flegel, M.D., Clay, M.D., Deyholos, M.K., Vederas, J.C., James, M.N.G.
Deposit date:2007-05-17
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of LL-diaminopimelate aminotransferase from Arabidopsis thaliana: a recently discovered enzyme in the biosynthesis of L-lysine by plants and Chlamydia
J.Mol.Biol., 371, 2007
3A4K
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CRYSTAL STRUCTURAL ANALYSIS OF HINDIII RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA AND DIVALENT CATIONS AT 2.17 ANGSTROM RESOLUTION
Descriptor:Type-2 restriction enzyme HindIII, DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'), ...
Authors:Watanabe, N., Sato, C., Takasaki, Y., Tanaka, I.
Deposit date:2009-07-09
Release date:2009-10-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations
Acta Crystallogr.,Sect.D, 65, 2009
3ASA
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CRYSTAL STRUCTURE OF APO-LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM CHLAMYDIA TRACHOMATIS
Descriptor:LL-diaminopimelate aminotransferase
Authors:Watanabe, N., James, M.N.
Deposit date:2010-12-10
Release date:2011-08-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Structure of ll-Diaminopimelate Aminotransferase from Chlamydia trachomatis: Implications for Its Broad Substrate Specificity.
J.Mol.Biol., 411, 2011
3ASB
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CRYSTAL STRUCTURE OF PLP-BOUND LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM CHLAMYDIA TRACHOMATIS
Descriptor:LL-diaminopimelate aminotransferase, (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid
Authors:Watanabe, N., James, M.N.
Deposit date:2010-12-10
Release date:2011-08-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of ll-Diaminopimelate Aminotransferase from Chlamydia trachomatis: Implications for Its Broad Substrate Specificity.
J.Mol.Biol., 411, 2011
3EI5
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CRYSTAL STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH PLP-GLU: AN EXTERNAL ALDIMINE MIMIC
Descriptor:LL-diaminopimelate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid, GLYCEROL, ...
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EI6
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CRYSTAL STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH PLP-DAP: AN EXTERNAL ALDIMINE MIMIC
Descriptor:LL-diaminopimelate aminotransferase, SULFATE ION, (2S,6S)-2-amino-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]heptanedioic acid, ...
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EI7
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CRYSTAL STRUCTURE OF APO-LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA (NO PLP)
Descriptor:LL-diaminopimelate aminotransferase, SULFATE ION
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EI8
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CRYSTAL STRUCTURE OF K270N VARIANT OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH LL-DAP: EXTERNAL ALDIMINE FORM
Descriptor:LL-diaminopimelate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, ...
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EI9
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CRYSTAL STRUCTURE OF K270N VARIANT OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH L-GLU: EXTERNAL ALDIMINE FORM
Descriptor:LL-diaminopimelate aminotransferase, (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid, GLYCEROL, ...
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EIA
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CRYSTAL STRUCTURE OF K270Q VARIANT OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA COMPLEXED WITH L-GLU: EXTERNAL ALDIMINE FORM
Descriptor:LL-diaminopimelate aminotransferase, SULFATE ION, (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
3EIB
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CRYSTAL STRUCTURE OF K270N VARIANT OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM ARABIDOPSIS THALIANA
Descriptor:LL-diaminopimelate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, ...
Authors:Watanabe, N., Clay, M.D., van Belkum, M.J., Cherney, M.M., Vederas, J.C., James, M.N.G.
Deposit date:2008-09-15
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana.
J.Mol.Biol., 384, 2008
5T06
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CRYSTAL STRUCTURE OF A PUTATIVE ACYL-COA THIOESTERASE EC709/ECK0725 FROM ESCHERICHIA COLI IN COMPLEX WITH HEXANOYL-COA
Descriptor:Acyl-CoA thioester hydrolase YbgC, 1,2-ETHANEDIOL, HEXANOYL-COENZYME A
Authors:Watanabe, N., Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-08-15
Release date:2016-09-07
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Hexanoyl-CoA
To be published
5T07
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CRYSTAL STRUCTURE OF A PUTATIVE ACYL-COA THIOESTERASE EC709/ECK0725 FROM ESCHERICHIA COLI IN COMPLEX WITH DECANOYL-COA
Descriptor:Acyl-CoA thioester hydrolase YbgC, decanoyl-CoA
Authors:Watanabe, N., Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-08-15
Release date:2016-09-07
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.717 Å)
Cite:Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Decanoyl-CoA
To be published
5U1H
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CRYSTAL STRUCTURE OF THE C-TERMINAL PEPTIDOGLYCAN BINDING DOMAIN OF OPRF (PA1777) FROM PSEUDOMONAS AERUGINOSA
Descriptor:Outer membrane porin F, (2R,6S)-2-amino-6-(carboxyamino)-7-{[(1R)-1-carboxyethyl]amino}-7-oxoheptanoic acid, ACETATE ION, ...
Authors:Watanabe, N., Stogios, P.J., Skarina, T., Wawrzak, Z., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-11-28
Release date:2017-01-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa
To be published
3VPL
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CRYSTAL STRUCTURE OF A 2-FLUOROXYLOTRIOSYL COMPLEX OF THE VIBRIO SP. AX-4 BETA-1,3-XYLANASE
Descriptor:Beta-1,3-xylanase XYL4, 2-deoxy-2-fluoro-beta-D-xylopyranose, BETA-D-XYLOPYRANOSE, ...
Authors:Watanabe, N., Sakaguchi, K.
Deposit date:2012-03-05
Release date:2013-03-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 beta-1,3-xylanase at 1.2 A resolution
To be Published
3A5P
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CRYSTAL STRUCTURE OF HEMAGGLUTININ
Descriptor:Haemagglutinin I
Authors:Watanabe, N., Sakai, N., Nakamura, T., Nabeshima, Y., Kouno, T., Mizuguchi, M., Kawano, K.
Deposit date:2009-08-10
Release date:2010-08-11
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of legume lectin fold
J.Mol.Biol., 405, 2011
5Z6F
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HIGH-PRESSURE CRYSTAL STRUCTURE ANALYSIS OF DHFR(0.1 MPA)
Descriptor:Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, N., Nagae, T., Yamada, H.
Deposit date:2018-01-22
Release date:2018-09-19
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.
Acta Crystallogr D Struct Biol, 74, 2018
5Z6J
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HIGH-PRESSURE CRYSTAL STRUCTURE ANALYSIS OF M20 LOOP CLOSED DHFR AT 220 MPA
Descriptor:Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, N., Nagae, T., Yamada, H.
Deposit date:2018-01-23
Release date:2018-09-19
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.
Acta Crystallogr D Struct Biol, 74, 2018
5Z6K
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HIGH-PRESSURE CRYSTAL STRUCTURE ANALYSIS OF M20 LOOP CLOSED DHFR AT 400 MPA
Descriptor:Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, N., Nagae, T., Yamada, H.
Deposit date:2018-01-23
Release date:2018-09-19
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.
Acta Crystallogr D Struct Biol, 74, 2018
5Z6L
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HIGH-PRESSURE CRYSTAL STRUCTURE ANALYSIS OF M20 LOOP CLOSED DHFR AT 650 MPA
Descriptor:Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, N., Nagae, T., Yamada, H.
Deposit date:2018-01-23
Release date:2018-09-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.
Acta Crystallogr D Struct Biol, 74, 2018
5Z6M
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HIGH-PRESSURE CRYSTAL STRUCTURE ANALYSIS OF M20 LOOP CLOSED DHFR AT 800 MPA
Descriptor:Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Watanabe, N., Nagae, T., Yamada, H.
Deposit date:2018-01-23
Release date:2018-09-19
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP.
Acta Crystallogr D Struct Biol, 74, 2018