Author results

1IQ8
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII
Descriptor:ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, ZINC ION, MAGNESIUM ION
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-09
Release date:2002-05-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IQW
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MOUSE ANTI-HUMAN FAS ANTIBODY HFE7A
Descriptor:ANTIBODY M-HFE7A, LIGHT CHAIN, HEAVY CHAIN
Authors:Ito, S., Takayama, T., Hanzawa, H., Ichikawa, K., Ohsumi, J., Serizawa, N., Hata, T., Haruyama, H.
Deposit date:2001-08-10
Release date:2002-01-23
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the antigen-binding fragment of apoptosis-inducing mouse anti-human Fas monoclonal antibody HFE7A.
J.Biochem., 131, 2002
1IT7
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH GUANINE
Descriptor:Archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT8
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CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ARCHAEOSINE PRECURSOR, PREQ0
Descriptor:archaeosine tRNA-guanine transglycosylase, ZINC ION, MAGNESIUM ION, ...
Authors:Ishitani, R., Nureki, O., Fukai, S., Kijimoto, T., Nameki, N., Watanabe, M., Kondo, H., Sekine, M., Okada, N., Nishimura, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-01-11
Release date:2002-05-22
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1N27
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SOLUTION STRUCTURE OF THE PWWP DOMAIN OF MOUSE HEPATOMA-DERIVED GROWTH FACTOR, RELATED PROTEIN 3
Descriptor:Hepatoma-derived growth factor, related protein 3
Authors:Nameki, N., Kigawa, T., Koshiba, S., Kobayashi, N., Tochio, N., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-10-22
Release date:2003-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Protein Sci., 14, 2005
1UAW
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SOLUTION STRUCTURE OF THE N-TERMINAL RNA-BINDING DOMAIN OF MOUSE MUSASHI1
Descriptor:mouse-musashi-1
Authors:Miyanoiri, Y., Kobayashi, H., Watanabe, M., Ikeda, T., Nagata, T., Okano, H., Uesugi, S., Katahira, M.
Deposit date:2003-03-24
Release date:2004-03-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics
J.Biol.Chem., 278, 2003
1V77
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CRYSTAL STRUCTURE OF THE PH1877 PROTEIN
Descriptor:hypothetical protein PH1877
Authors:Takagi, H., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2003-12-12
Release date:2004-08-31
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
1V9Y
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CRYSTAL STRUCTURE OF THE HEME PAS SENSOR DOMAIN OF EC DOS (FERRIC FORM)
Descriptor:Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kurokawa, H., Lee, D.S., Watanabe, M., Sagami, I., Mikami, B., Raman, C.S., Shimizu, T.
Deposit date:2004-02-04
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor.
J.Biol.Chem., 279, 2004
1V9Z
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CRYSTAL STRUCTURE OF THE HEME PAS SENSOR DOMAIN OF EC DOS (FERROUS FORM)
Descriptor:Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kurokawa, H., Lee, D.S., Watanabe, M., Sagami, I., Mikami, B., Raman, C.S., Shimizu, T.
Deposit date:2004-02-04
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor.
J.Biol.Chem., 279, 2004
1VB6
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CRYSTAL STRUCTURE OF THE HEME PAS SENSOR DOMAIN OF EC DOS (OXYGEN-BOUND FORM)
Descriptor:Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE, OXYGEN MOLECULE
Authors:Kurokawa, H., Watanabe, M., Sagami, I., Mikami, B., Shimizu, T.
Deposit date:2004-02-24
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure of oxygen-bound form of a Heme PAS domain of Ec DOS
To be Published
2CZW
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CRYSTAL STRUCTURE ANALYSIS OF PROTEIN COMPONENT PH1496P OF P.HORIKOSHII RIBONUCLEASE P
Descriptor:50S ribosomal protein L7Ae
Authors:Fukuhara, H., Kifusa, M., Watanabe, M., Terada, A., Honda, T., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2005-07-19
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
2DVY
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CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASES PABI
Descriptor:Restriction endonuclease PabI
Authors:Miyazono, K., Watanabe, M., Kamo, M., Sawasaki, T., Nagata, K., Endo, Y., Tanokura, M., Kobayashi, I.
Deposit date:2006-08-01
Release date:2007-05-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
2E7D
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CRYSTAL STRUCTURE OF A NEAT DOMAIN FROM STAPHYLOCOCCUS AUREUS
Descriptor:Hypothetical protein IsdH, SULFATE ION, ACETATE ION, ...
Authors:Suenaga, A., Tanaka, Y., Yao, M., Kumagai, I., Tanaka, I., Tsumoto, K.
Deposit date:2007-01-09
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
2KWC
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THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8
Descriptor:Autophagy-related protein 8
Authors:Kumeta, H., Watanabe, M., Nakatogawa, H., Yamaguchi, M., Ogura, K., Adachi, W., Fujioka, Y., Noda, N.N., Ohsumi, Y., Inagaki, F.
Deposit date:2010-04-05
Release date:2010-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
2YU0
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SOLUTION STRUCTURES OF THE PAAD_DAPIN DOMAIN OF MUS MUSCULUS INTERFERON-ACTIVATABLE PROTEIN 205
Descriptor:Interferon-activable protein 205
Authors:Sato, M., Tochio, N., Koshiba, S., Watanabe, M., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-02-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of the PAAD_DAPIN domain of mus musculus interferon-activatable protein 205
To be Published
2Z2E
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CRYSTAL STRUCTURE OF CANINE MILK LYSOZYME STABILIZED AGAINST NON-ENZYMATIC DEAMIDATION
Descriptor:Lysozyme C, milk isozyme, SULFATE ION
Authors:Nonaka, Y., Akieda, D., Watanabe, N., Tanaka, I., Kamiya, M., Aizawa, T., Nitta, K., Demura, M., Kawano, K.
Deposit date:2007-05-21
Release date:2007-11-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
2Z6F
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CRYSTAL STRUCTURE OF NEAT DOMAIN FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH HEME
Descriptor:Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tanaka, Y., Suenaga, A., Tsumoto, K.
Deposit date:2007-07-31
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
2ZCZ
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CRYSTAL STRUCTURES AND THERMOSTABILITY OF MUTANT TRAP3 A7 (ENGINEERED TRAP)
Descriptor:Transcription attenuation protein mtrB, TRYPTOPHAN
Authors:Watanabe, M., Mishima, Y., Yamashita, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
2ZD0
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CRYSTAL STRUCTURES AND THERMOSTABILITY OF MUTANT TRAP3 A5 (ENGINEERED TRAP)
Descriptor:Transcription attenuation protein mtrB, TRYPTOPHAN
Authors:Watanabe, M., Mishima, Y., Yamashita, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.
Deposit date:2007-11-15
Release date:2008-04-29
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
2ZP8
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THE NATURE OF THE TRAP:ANTI-TRAP COMPLEX
Descriptor:Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, TRYPTOPHAN, ...
Authors:Watanabe, M., Heddle, J.G., Unzai, S., Akashi, S., Park, S.Y., Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZP9
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THE NATURE OF THE TRAP:ANTI-TRAP COMPLEX
Descriptor:Transcription attenuation protein mtrB, Tryptophan RNA-binding attenuator protein-inhibitory protein, TRYPTOPHAN, ...
Authors:Watanabe, M., Heddle, J.G., Unzai, S., Akashi, S., Park, S.Y., Tame, J.R.H.
Deposit date:2008-07-08
Release date:2009-02-03
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The nature of the TRAP-Anti-TRAP complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
3AJY
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CRYSTAL STRUCTURE OF ANCESTRAL CONGERIN CON-ANC
Descriptor:Ancestral congerin Con-anc, BETA-D-GLUCOSE, BETA-D-GALACTOSE
Authors:Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
Deposit date:2010-06-29
Release date:2011-05-18
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
3AJZ
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CRYSTAL STRUCTURE OF ANCESTRAL CONGERIN CON-ANC
Descriptor:Ancestral congerin Con-anc, BETA-D-GALACTOSE, BETA-D-GLUCOSE
Authors:Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
Deposit date:2010-06-29
Release date:2011-05-18
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
3AK0
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CRYSTAL STRUCTURE OF ANCESTRAL CONGERIN CON-ANC'-N28K
Descriptor:Ancestral congerin Con-anc, BETA-D-GALACTOSE, BETA-D-GLUCOSE
Authors:Konno, A., Kitagawa, A., Watanabe, M., Ogawa, T., Shirai, T.
Deposit date:2010-06-29
Release date:2011-05-18
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
3AQD
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UNLIGANDED TRAP
Descriptor:Transcription attenuation protein mtrB
Authors:Malay, A.A.D., Watanabe, M., Heddle, J.G., Tame, J.R.H.
Deposit date:2010-10-29
Release date:2010-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Allostery in TRAP
To be Published
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