Author results

2FXY
  • Download 2fxy
  • View 2fxy
Molmil generated image of 2fxy
SOLUTION STRUCTURE OF 55-72 SEGMENT OF STAPHYLOCOCCAL NUCLEASE
Descriptor:18-mer peptide from Thermonuclease
Authors:Wang, M., Shan, L., Wang, J.F.
Deposit date:2006-02-07
Release date:2006-12-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Two peptide fragments G55-I72 and K97-A109 from staphylococcal nuclease exhibit different behaviors in conformational preferences for helix formation
Biopolymers, 83, 2006
2FXZ
  • Download 2fxz
  • View 2fxz
Molmil generated image of 2fxz
SOLUTION STRUCTURE OF 97-109 SEGMENT OF STAPHYLOCOCCAL NUCLEASE
Descriptor:13-mer peptide from Thermonuclease
Authors:Wang, M., Shan, L., Wang, J.F.
Deposit date:2006-02-07
Release date:2006-12-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Two peptide fragments G55-I72 and K97-A109 from staphylococcal nuclease exhibit different behaviors in conformational preferences for helix formation
Biopolymers, 83, 2006
2KQ3
  • Download 2kq3
  • View 2kq3
Molmil generated image of 2kq3
SOLUTION STRUCTURE OF SNASE140
Descriptor:Thermonuclease
Authors:Wang, M., Feng, Y., Yao, H., Wang, J.
Deposit date:2009-10-26
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Importance of the C-Terminal Loop L137-S141 for the Folding and Folding Stability of Staphylococcal Nuclease
Biochemistry, 49, 2010
3NCI
  • Download 3nci
  • View 3nci
Molmil generated image of 3nci
RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE DG AT 1.8 ANGSTROM RESOLUTION
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Blaha, G., Steitz, T.A., Konigsberg, W.H., Wang, J.
Deposit date:2010-06-04
Release date:2011-02-02
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Insights into base selectivity from the 1.8 A resolution structure of an RB69 DNA polymerase ternary complex.
Biochemistry, 50, 2011
4QY0
  • Download 4qy0
  • View 4qy0
Molmil generated image of 4qy0
STRUCTURE OF H10 FROM HUMAN-INFECTING H10N8
Descriptor:hemagglutinin, N-ACETYL-D-GLUCOSAMINE
Authors:Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.
Deposit date:2014-07-23
Release date:2015-01-28
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus
Nat Commun, 6, 2015
4QY1
  • Download 4qy1
  • View 4qy1
Molmil generated image of 4qy1
STRUCTURE OF H10 FROM HUMAN-INFECTING H10N8 IN COMPLEX WITH AVIAN RECEPTOR
Descriptor:hemagglutinin, N-ACETYL-D-GLUCOSAMINE, O-SIALIC ACID, ...
Authors:Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.
Deposit date:2014-07-23
Release date:2015-01-28
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus
Nat Commun, 6, 2015
4QY2
  • Download 4qy2
  • View 4qy2
Molmil generated image of 4qy2
STRUCTURE OF H10 FROM HUMAN-INFECTING H10N8 VIRUS IN COMPLEX WITH HUMAN RECEPTOR ANALOG
Descriptor:hemagglutinin, N-ACETYL-D-GLUCOSAMINE, O-SIALIC ACID
Authors:Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., Gao, G.F.
Deposit date:2014-07-23
Release date:2015-01-28
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus
Nat Commun, 6, 2015
4X1B
  • Download 4x1b
  • View 4x1b
Molmil generated image of 4x1b
HUMAN SERUM TRANSFERRIN WITH FERRIC ION BOUND AT THE C-LOBE ONLY
Descriptor:Serotransferrin, FE (III) ION, MALONATE ION, ...
Authors:Wang, M., Zhang, H., Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2015-05-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015
4X1D
  • Download 4x1d
  • View 4x1d
Molmil generated image of 4x1d
YTTERBIUM-BOUND HUMAN SERUM TRANSFERRIN
Descriptor:Serotransferrin, YTTERBIUM (III) ION, MALONATE ION, ...
Authors:Wang, M., Zhang, H., Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2015-05-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015
5ZQY
  • Download 5zqy
  • View 5zqy
Molmil generated image of 5zqy
CRYSTAL STRUCTURE OF A POLY(ADP-RIBOSE) GLYCOHYDROLASE
Descriptor:Poly(ADP-ribose) glycohydrolase ARH3, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Wang, M., Yuan, Z., Ma, Y., Wang, J., Liu, X.
Deposit date:2018-04-20
Release date:2018-08-15
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (1.577 Å)
Cite:Structure-function analyses reveal the mechanism of the ARH3-dependent hydrolysis of ADP-ribosylation.
J. Biol. Chem., 293, 2018
2KJ4
  • Download 2kj4
  • View 2kj4
Molmil generated image of 2kj4
SOLUTION STRUCTURE OF THE COMPLEX OF VEK-30 AND PLASMINOGEN KRINGLE 2
Descriptor:plasminogen, VEK-30
Authors:Wang, M., Zajicek, J., Prorok, M., Castellin, F.J.
Deposit date:2009-05-21
Release date:2009-10-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the complex of VEK-30 and plasminogen kringle 2.
J.Struct.Biol., 169, 2010
1AMO
  • Download 1amo
  • View 1amo
Molmil generated image of 1amo
THREE-DIMENSIONAL STRUCTURE OF NADPH-CYTOCHROME P450 REDUCTASE: PROTOTYPE FOR FMN-AND FAD-CONTAINING ENZYMES
Descriptor:NADPH-CYTOCHROME P450 REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, FLAVIN MONONUCLEOTIDE, ...
Authors:Wang, M., Roberts, D.L., Paschke, R., Shea, T.M., Masters, B.S.S., Kim, J.J.P.
Deposit date:1997-06-17
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three-dimensional structure of NADPH-cytochrome P450 reductase: prototype for FMN- and FAD-containing enzymes.
Proc.Natl.Acad.Sci.USA, 94, 1997
1NHU
  • Download 1nhu
  • View 1nhu
Molmil generated image of 1nhu
HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR
Descriptor:HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE, (2S)-2-[(2,4-DICHLORO-BENZOYL)-(3-TRIFLUOROMETHYL-BENZYL)-AMINO]-3-PHENYL-PROPIONIC ACID
Authors:Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.
Deposit date:2002-12-19
Release date:2003-03-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Non-Nucleoside Analogue Inhibitors Bind to an Allosteric Site on HCV NS5B Polymerase: Crystal Structures and Mechanism of Inhibition
J.Biol.Chem., 278, 2003
1NHV
  • Download 1nhv
  • View 1nhv
Molmil generated image of 1nhv
HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR
Descriptor:HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE, (2S)-2-[(5-BENZOFURAN-2-YL-THIOPHEN-2-YLMETHYL)-(2,4-DICHLORO-BENZOYL)-AMINO]-3-PHENYL-PROPIONIC ACID
Authors:Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.
Deposit date:2002-12-19
Release date:2003-03-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Non-Nucleoside Analogue Inhibitors Bind to an Allosteric Site on HCV NS5B Polymerase: Crystal Structures and Mechanism of Inhibition
J.Biol.Chem., 278, 2003
2F48
  • Download 2f48
  • View 2f48
Molmil generated image of 2f48
CRYSTAL STRUCTURE OF A NOVEL FRUCTOSE 1,6-BISPHOSPHATE AND ALF3 CONTAINING PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCTO-1-KINASE COMPLEX FROM BORRELIA BURGDORFERI
Descriptor:diphosphate--fructose-6-phosphate 1-phosphotransferase, BETA-FRUCTOSE-1,6-DIPHOSPHATE, ALUMINUM FLUORIDE
Authors:Wang, M.
Deposit date:2005-11-22
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal Structure of A Novel Fructose 1,6-Bisphosphate and AlF3 containing Pyrophosphate-dependent Phosphofructo-1-kinase Complex from Borrelia burgdorferi
TO BE PUBLISHED
5EQJ
  • Download 5eqj
  • View 5eqj
Molmil generated image of 5eqj
CRYSTAL STRUCTURE OF THE TWO-SUBUNIT TRNA M1A58 METHYLTRANSFERASE FROM SACCHAROMYCES CEREVISIAE
Descriptor:tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6, tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
Authors:Zhu, Y., Wang, M., Wang, C., Fan, X., Jiang, X., Teng, M., Li, X.
Deposit date:2015-11-13
Release date:2016-09-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the two-subunit tRNA m(1)A58 methyltransferase TRM6-TRM61 from Saccharomyces cerevisiae.
Sci Rep, 6, 2016
5ERG
  • Download 5erg
  • View 5erg
Molmil generated image of 5erg
CRYSTAL STRUCTURE OF THE TWO-SUBUNIT TRNA M1A58 METHYLTRANSFERASE TRM6-TRM61 IN COMPLEX WITH SAM
Descriptor:tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6, tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, S-ADENOSYLMETHIONINE
Authors:Zhu, Y., Wang, M., Wang, C., Fan, X., Jiang, X., Teng, M., Li, X.
Deposit date:2015-11-14
Release date:2016-09-14
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Crystal structure of the two-subunit tRNA m(1)A58 methyltransferase TRM6-TRM61 from Saccharomyces cerevisiae.
Sci Rep, 6, 2016
2PL5
  • Download 2pl5
  • View 2pl5
Molmil generated image of 2pl5
CRYSTAL STRUCTURE OF HOMOSERINE O-ACETYLTRANSFERASE FROM LEPTOSPIRA INTERROGANS
Descriptor:Homoserine O-acetyltransferase, GLYCEROL
Authors:Liu, L., Wang, M., Wang, Y., Wei, Z., Xu, H., Gong, W.
Deposit date:2007-04-19
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of homoserine O-acetyltransferase from Leptospira interrogans
Biochem.Biophys.Res.Commun., 363, 2007
3LZI
  • Download 3lzi
  • View 3lzi
Molmil generated image of 3lzi
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
Descriptor:DNA polymerase, DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Beckman, J., Blaha, G., Wang, J., Konigsberg, W.H.
Deposit date:2010-03-01
Release date:2010-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, 2010
3LZJ
  • Download 3lzj
  • View 3lzj
Molmil generated image of 3lzj
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
Descriptor:DNA polymerase, DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Beckman, J., Blaha, G., Wang, J., Konigsberg, W.H.
Deposit date:2010-03-01
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, 2010
3NAE
  • Download 3nae
  • View 3nae
Molmil generated image of 3nae
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE GUANIDINOHYDANTOIN
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Beckman, J., Blaha, G., Wang, J., Konigsberg, W.H.
Deposit date:2010-06-01
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA Polymerase Allows dAMP and dGMP To Be Inserted opposite Guanidinohydantoin .
Biochemistry, 49, 2010
3NDK
  • Download 3ndk
  • View 3ndk
Molmil generated image of 3ndk
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Wang, J., Konigsberg, W.H.
Deposit date:2010-06-07
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NE6
  • Download 3ne6
  • View 3ne6
Molmil generated image of 3ne6
RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Wang, J., Konigsberg, W.H.
Deposit date:2010-06-08
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NGI
  • Download 3ngi
  • View 3ngi
Molmil generated image of 3ngi
RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Wang, J., Konigsberg, W.H.
Deposit date:2010-06-11
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.886 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
3NHG
  • Download 3nhg
  • View 3nhg
Molmil generated image of 3nhg
RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
Descriptor:DNA polymerase, DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M., Wang, J., Konigsberg, W.H.
Deposit date:2010-06-14
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Variation in Mutation Rates Caused by RB69pol Fidelity Mutants Can Be Rationalized on the Basis of Their Kinetic Behavior and Crystal Structures.
J.Mol.Biol., 406, 2011
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan