Author results

1A2X
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COMPLEX OF TROPONIN C WITH A 47 RESIDUE (1-47) FRAGMENT OF TROPONIN I
Descriptor:TROPONIN C, TROPONIN I, CALCIUM ION
Authors:Vassylyev, D.G., Takeda, S., Wakatsuki, S., Maeda, K., Maeda, Y.
Deposit date:1998-01-13
Release date:1998-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of troponin C in complex with troponin I fragment at 2.3-A resolution.
Proc.Natl.Acad.Sci.USA, 95, 1998
2A6E
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Vassylyeva, M.N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T.H., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Cell(Cambridge,Mass.), 122, 2005
1UJJ
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1UJK
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PHOSPHOPEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase, IODIDE ION
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1V82
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P APO FORM
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, L(+)-TARTARIC ACID
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
1V83
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH UDP AND MN2+
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, MANGANESE (II) ION, L(+)-TARTARIC ACID, ...
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
1V84
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH N-ACETYLLACTOSAMINE, UDP, AND MN2+
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, BETA-D-GALACTOSE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, ...
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
2A6H
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Temiakov, D., Zenkin, N., Vassylyeva, M.N., Perederina, A., Tahirov, T.H., Savkina, M., Zorov, S., Nikiforov, V., Igarashi, N., Matsugaki, N., Wakatsuki, S., Severinov, K., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of transcription inhibition by antibiotic streptolydigin.
Mol.Cell, 19, 2005
2D0J
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CRYSTAL STRUCTURE OF HUMAN GLCAT-S APO FORM
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
Authors:Shiba, T., Kakuda, S., Ishiguro, M., Oka, S., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2005-08-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope
To be published
2D3G
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DOUBLE SIDED UBIQUITIN BINDING OF HRS-UIM
Descriptor:ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate
Authors:Hirano, S., Kawasaki, M., Kato, R., Wakatsuki, S.
Deposit date:2005-09-28
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Nat.Struct.Mol.Biol., 13, 2006
2D7I
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CRYSTAL STRUCTURE OF PP-GALNAC-T10 WITH UDP, GALNAC AND MN2+
Descriptor:Polypeptide N-acetylgalactosaminyltransferase 10, N-ACETYL-D-GLUCOSAMINE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Kubota, T., Shiba, T., Sugioka, S., Kato, R., Wakatsuki, S., Narimatsu, H.
Deposit date:2005-11-21
Release date:2006-11-07
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2D7R
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CRYSTAL STRUCTURE OF PP-GALNAC-T10 COMPLEXED WITH GALNAC-SER ON LECTIN DOMAIN
Descriptor:Polypeptide N-acetylgalactosaminyltransferase 10, N-ACETYL-D-GLUCOSAMINE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Kubota, T., Shiba, T., Sugioka, S., Kato, R., Wakatsuki, S., Narimatsu, H.
Deposit date:2005-11-25
Release date:2006-11-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2DX5
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THE COMPLEX STRUCTURE BETWEEN THE MOUSE EAP45-GLUE DOMAIN AND UBIQUITIN
Descriptor:Vacuolar protein sorting protein 36, Ubiquitin
Authors:Hirano, S., Suzuki, N., Slagsvold, T., Kawasaki, M., Trambaiolo, D., Kato, R., Stenmark, H., Wakatsuki, S.
Deposit date:2006-08-24
Release date:2006-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain
Nat.Struct.Mol.Biol., 13, 2006
2EAK
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH LACTOSE
Descriptor:Galectin-9, ALPHA-LACTOSE, (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, ...
Authors:Nagae, M., Nakamura-Tsuruta, S., Nishi, N., Nakamura, T., Hirabayashi, J., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-09-25
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
2EAL
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH FORSSMAN PENTASACCHARIDE
Descriptor:Galectin-9, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Nagae, M., Nakamura-Tsuruta, S., Nishi, N., Nakamura, T., Hirabayashi, J., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-09-25
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
2IEY
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN HEXAGONAL SPACE GROUP
Descriptor:Ras-related protein Rab-27B, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2IEZ
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN MONOCLINIC SPACE GROUP
Descriptor:Ras-related protein Rab-27B, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2IF0
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CRYSTAL STRUCTURE OF MOUSE RAB27B BOUND TO GDP IN MONOCLINIC SPACE GROUP
Descriptor:Ras-related protein Rab-27B, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Chavas, L.M.G., Torii, S., Kamikubo, H., Kawasaki, M., Ihara, K., Kato, R., Kataoka, M., Izumi, T., Wakatsuki, S.
Deposit date:2006-09-19
Release date:2007-05-01
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
2Z44
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CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z45
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CRYSTAL STRUCTURE OF ZN-BOUND ORF134
Descriptor:ORF134, ZINC ION
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z46
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CRYSTAL STRUCTURE OF NATIVE-ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Crystal Structure of ORF134
To be Published
2ZVN
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NEMO COZI DOMAIN INCOMPLEX WITH DIUBIQUITIN IN P212121 SPACE GROUP
Descriptor:UBC protein, NF-kappa-B essential modulator
Authors:Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
2ZVO
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NEMO COZI DOMAIN IN COMPLEX WITH DIUBIQUITIN IN C2 SPACE GROUP
Descriptor:UBC protein, NF-kappa-B essential modulator
Authors:Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3A33
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UBCH5B~UBIQUITIN CONJUGATE
Descriptor:Ubiquitin-conjugating enzyme E2 D2, Ubiquitin, GLYCEROL
Authors:Sakata, E., Satoh, T., Yamamoto, S., Yamaguchi, Y., Yagi-Utsumi, M., Kurimoto, E., Wakatsuki, S., Kato, K.
Deposit date:2009-06-08
Release date:2009-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of UbcH5b~Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2~Ub Conjugates
Structure, 18, 2010
3A4U
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CRYSTAL STRUCTURE OF MCFD2 IN COMPLEX WITH CARBOHYDRATE RECOGNITION DOMAIN OF ERGIC-53
Descriptor:Protein ERGIC-53, Multiple coagulation factor deficiency protein 2, CALCIUM ION, ...
Authors:Nishio, M., Kamiya, Y., Mizushima, T., Wakatsuki, S., Sasakawa, H., Yamamoto, K., Uchiyama, S., Noda, M., McKay, A.R., Fukui, K., Hauri, H.P., Kato, K.
Deposit date:2009-07-17
Release date:2010-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency.
Proc.Natl.Acad.Sci.USA, 107, 2010