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6HEG
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BU of 6heg by Molmil
Crystal structure of Escherichia coli DEAH/RHA helicase HrpB
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase HrpB, PHOSPHATE ION, ...
Authors:Xin, B.G, Chen, W.F, Rety, S, Dai, Y.X, Xi, X.G.
Deposit date:2018-08-20
Release date:2018-09-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.019 Å)
Cite:Crystal structure of Escherichia coli DEAH/RHA helicase HrpB.
Biochem. Biophys. Res. Commun., 504, 2018
6J3Q
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BU of 6j3q by Molmil
Capsid structure of a freshwater cyanophage Siphoviridae Mic1
Descriptor: cement protein, major capsid protein
Authors:Jin, H, Jiang, Y.L, Yang, F, Zhang, J.T, Li, W.F, Zhou, K, Ju, J, Chen, Y, Zhou, C.Z.
Deposit date:2019-01-05
Release date:2019-10-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Capsid Structure of a Freshwater Cyanophage Siphoviridae Mic1.
Structure, 27, 2019
1AVP
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BU of 1avp by Molmil
STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEINASE WITH ITS 11 AMINO ACID COFACTOR
Descriptor: ADENOVIRAL PROTEINASE
Authors:Ding, J, Mcgrath, W.J, Sweet, R.M, Mangel, W.F.
Deposit date:1996-04-04
Release date:1997-11-19
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the human adenovirus proteinase with its 11 amino acid cofactor.
EMBO J., 15, 1996
8BNS
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BU of 8bns by Molmil
Crystal structure of Pif1 from Sulfurihydrogenibium sp in complex with ADP
Descriptor: AAA ATPase, ADENOSINE-5'-DIPHOSPHATE
Authors:Rety, S, Chen, W.F, Xi, X.G.
Deposit date:2022-11-14
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structural Studies of Pif1 Helicases from Thermophilic Bacteria.
Microorganisms, 11, 2023
5O6D
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BU of 5o6d by Molmil
Structure of ScPif1 in complex with polydT and ATPgS
Descriptor: ATP-dependent DNA helicase PIF1, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G.
Deposit date:2017-06-06
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.283 Å)
Cite:Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res., 46, 2018
5O6B
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BU of 5o6b by Molmil
Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, DNA (5'-D(*GP*GP*GP*TP*TP*T)-3'), ...
Authors:Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G.
Deposit date:2017-06-06
Release date:2017-12-13
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (2.029 Å)
Cite:Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res., 46, 2018
5O6E
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BU of 5o6e by Molmil
Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, CHLORIDE ION, ...
Authors:Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G.
Deposit date:2017-06-06
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.345 Å)
Cite:Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res., 46, 2018
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
Descriptor: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
Authors:Padavattan, S, AndERSON, W.F, Schirmer, T.
Deposit date:2008-10-24
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
2ZBJ
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BU of 2zbj by Molmil
Crystal structure of Dioclea rostrata lectin
Descriptor: CALCIUM ION, Lectin alpha chain, MANGANESE (II) ION, ...
Authors:de Oliveira, T.M, Delatorre, P, da Rocha, B.A.M, de Sousa, E.P, Nascimento, K.S, Bezerra, G.A, Moura, T.R, Benevides, R.G, Bezerra, E.H.S, Moreno, F.B.M.B, Freire, V.N, de Azevedo Jr, W.F, Cavada, B.S.
Deposit date:2007-10-22
Release date:2008-08-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of Dioclea rostrata lectin: Insights into understanding the pH-dependent dimer-tetramer equilibrium and the structural basis for carbohydrate recognition in Diocleinae lectins
J.Struct.Biol., 164, 2008
6S3P
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BU of 6s3p by Molmil
Crystal structure of helicase Pif1 from Thermus oshimai in complex with (dT)18
Descriptor: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'), PIF1 helicase
Authors:Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G.
Deposit date:2019-06-25
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.926 Å)
Cite:Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.
Nucleic Acids Res., 49, 2021
6S3I
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BU of 6s3i by Molmil
Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP-MgF4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G.
Deposit date:2019-06-25
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.455 Å)
Cite:Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.
Nucleic Acids Res., 49, 2021
8BFS
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BU of 8bfs by Molmil
Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ326
Descriptor: 1,2-ETHANEDIOL, 3~{H}-pyrrolo[2,3-c]isoquinolin-5-amine, Calcium/calmodulin-dependent protein kinase type 1D, ...
Authors:Kraemer, A, Zhu, W.F, Hernandez-Olmos, V, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2022-10-26
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) in complex with FZ326
To Be Published
8BNX
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BU of 8bnx by Molmil
Crystal structure of Pif1 from Deferribacter desulfuricans in complex with AMPPNP
Descriptor: AAA family ATPase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Rety, S, Chen, W.F, Xi, X.G.
Deposit date:2022-11-14
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structural Studies of Pif1 Helicases from Thermophilic Bacteria.
Microorganisms, 11, 2023
8BNV
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BU of 8bnv by Molmil
Crystal structure of Pif1 from Deferribacter desulfuricans in apo from
Descriptor: AAA family ATPase, GLYCEROL, MAGNESIUM ION
Authors:Rety, S, Chen, W.F, Xi, X.G.
Deposit date:2022-11-14
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structural Studies of Pif1 Helicases from Thermophilic Bacteria.
Microorganisms, 11, 2023
8BH9
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BU of 8bh9 by Molmil
Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504
Descriptor: PCIF1_WW domain-containing protein, POTASSIUM ION, RNA (5'-R(P*AP*AP*GP*AP*AP*UP*GP*CP*AP*UP*UP*C)-3')
Authors:Rety, S, Chen, W.F, Xi, X.G.
Deposit date:2022-10-30
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 427-435 / 496-504
To Be Published
8BH8
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BU of 8bh8 by Molmil
Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 444-456
Descriptor: PCIF1_WW domain-containing protein, RNA (5'-R(P*AP*CP*AP*CP*AP*AP*GP*G)-3')
Authors:Rety, S, Chen, W.F, Xi, X.G.
Deposit date:2022-10-30
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure of Est1 from Candida Tropicalis in complex with TLC1 telomerase RNA fragment 444-456
To Be Published
6US9
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BU of 6us9 by Molmil
Influenza A M2 proton channel wild type TM domain bound to R-rimantadine
Descriptor: CHLORIDE ION, Matrix protein 2, RIMANTADINE
Authors:Thomaston, J.L, DeGrado, W.F.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity.
Biochemistry, 2021
6US8
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BU of 6us8 by Molmil
Influenza A M2 proton channel wild type TM domain bound to S-rimantadine
Descriptor: (1S)-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-amine, CHLORIDE ION, Matrix protein 2
Authors:Thomaston, J.L, DeGrado, W.F.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity.
Biochemistry, 2021
1AF9
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BU of 1af9 by Molmil
TETANUS NEUROTOXIN C FRAGMENT
Descriptor: TETANUS NEUROTOXIN
Authors:Umland, T.C, Wingert, L, Swaminathan, S, Furey, W.F, Schmidt, J.J, Sax, M.
Deposit date:1997-03-24
Release date:1998-04-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the receptor binding fragment HC of tetanus neurotoxin.
Nat.Struct.Biol., 4, 1997
1AL1
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BU of 1al1 by Molmil
CRYSTAL STRUCTURE OF ALPHA1: IMPLICATIONS FOR PROTEIN DESIGN
Descriptor: ALPHA HELIX PEPTIDE: ELLKKLLEELKG, SULFATE ION
Authors:Hill, C.P, Anderson, D.H, Wesson, L, Degrado, W.F, Eisenberg, D.
Deposit date:1990-07-02
Release date:1991-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of alpha 1: implications for protein design.
Science, 249, 1990
1U7J
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BU of 1u7j by Molmil
Solution structure of a diiron protein model
Descriptor: Four-helix bundle model, ZINC ION
Authors:Maglio, O, Nastri, F, Calhoun, J.R, Lahr, S, Pavone, V, DeGrado, W.F, Lombardi, A.
Deposit date:2004-08-04
Release date:2005-03-01
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Analysis and Design of Turns in alpha-Helical Hairpins
J.Mol.Biol., 346, 2005
1U7M
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BU of 1u7m by Molmil
Solution structure of a diiron protein model: Due Ferri(II) turn mutant
Descriptor: Four-helix bundle model, ZINC ION
Authors:Maglio, O, Nastri, F, Calhoun, J.R, Lahr, S, Pavone, V, DeGrado, W.F, Lombardi, A.
Deposit date:2004-08-04
Release date:2005-03-01
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Analysis and Design of Turns in alpha-Helical Hairpins
J.Mol.Biol., 346, 2005
6OT5
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BU of 6ot5 by Molmil
Structure of the TRPV3 K169A sensitized mutant in the presence of 2-APB at 3.6 A resolution
Descriptor: 2-aminoethyl diphenylborinate, Transient receptor potential cation channel subfamily V member 3,Transient receptor potential cation channel subfamily V member 3
Authors:Zubcevic, L, Borschel, W.F, Hsu, A.L, Borgnia, M.J, Lee, S.-Y.
Deposit date:2019-05-02
Release date:2019-05-22
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Regulatory switch at the cytoplasmic interface controls TRPV channel gating.
Elife, 8, 2019
6OT2
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BU of 6ot2 by Molmil
Structure of the TRPV3 K169A sensitized mutant in apo form at 4.1 A resolution
Descriptor: Transient receptor potential cation channel subfamily V member 3
Authors:Zubcevic, L, Borschel, W.F, Hsu, A.L, Borgnia, M.J, Lee, S.-Y.
Deposit date:2019-05-02
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Regulatory switch at the cytoplasmic interface controls TRPV channel gating.
Elife, 8, 2019
6PKW
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BU of 6pkw by Molmil
Cryo-EM structure of the zebrafish TRPM2 channel in the apo conformation, processed with C2 symmetry (pseudo C4 symmetry)
Descriptor: Transient receptor potential cation channel subfamily M member 2
Authors:Yin, Y, Wu, M, Hsu, A.L, Borschel, W.F, Borgnia, M.J, Lander, G.C, Lee, S.-Y.
Deposit date:2019-06-30
Release date:2019-08-28
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel.
Nat Commun, 10, 2019

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