Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2GB8
DownloadVisualize
BU of 2gb8 by Molmil
Solution structure of the complex between yeast iso-1-cytochrome c and yeast cytochrome c peroxidase
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, HEME C, ...
Authors:Volkov, A.N, Worrall, J.A.R, Ubbink, M.
Deposit date:2006-03-10
Release date:2006-11-21
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR.
Proc.Natl.Acad.Sci.Usa, 103, 2006
6HKC
DownloadVisualize
BU of 6hkc by Molmil
Solution structure of the Sushi 1 domain of GABAbR1a
Descriptor: Gamma-aminobutyric acid type B receptor subunit 1
Authors:Volkov, A.N, Buts, L, Van Molle, I.
Deposit date:2018-09-06
Release date:2019-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Secreted amyloid-beta precursor protein functions as a GABABR1a ligand to modulate synaptic transmission.
Science, 363, 2019
2JTI
DownloadVisualize
BU of 2jti by Molmil
Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
Authors:Ubbink, M, Volkov, A.N.
Deposit date:2007-08-01
Release date:2008-07-22
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations.
J.Am.Chem.Soc., 132, 2010
6TR8
DownloadVisualize
BU of 6tr8 by Molmil
Corynebacterium diphtheriae methionine sulfoxide reductase B (MsrB) solution structure - reduced form
Descriptor: Peptide-methionine (R)-S-oxide reductase, ZINC ION
Authors:Volkov, A.N, Tossounian, M.A, Buts, L, Messens, J.
Deposit date:2019-12-18
Release date:2020-02-05
Last modified:2020-03-25
Method:SOLUTION NMR
Cite:Methionine sulfoxide reductase B fromCorynebacterium diphtheriaecatalyzes sulfoxide reduction via an intramolecular disulfide cascade.
J.Biol.Chem., 295, 2020
8OIL
DownloadVisualize
BU of 8oil by Molmil
Plasmodium falciparum circumsporozoite protein C-terminal domain
Descriptor: Circumsporozoite protein
Authors:Sterckx, Y.G.-J, Volkov, A.N, Geens, R.
Deposit date:2023-03-23
Release date:2024-02-28
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Plasmodium falciparum circumsporozoite protein C-terminal domain
To Be Published
7NKV
DownloadVisualize
BU of 7nkv by Molmil
PaaR2 regulator N-terminal domain
Descriptor: Phage repressor protein CI
Authors:Prolic-Kalinsek, M, Loris, R, Volkov, A.N.
Deposit date:2021-02-19
Release date:2022-03-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system
To Be Published
8C7K
DownloadVisualize
BU of 8c7k by Molmil
YdaS from E. coli O157:H7 cryptic prophage CP-933P
Descriptor: Phage antirepressor protein Cro
Authors:Prolic-Kalinsek, M, Volkov, A.N, Loris, R.
Deposit date:2023-01-16
Release date:2023-01-25
Last modified:2023-03-22
Method:SOLUTION NMR
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
6YSE
DownloadVisualize
BU of 6yse by Molmil
Gp4 from the Pseudomonas phage LUZ24
Descriptor: Gp4
Authors:Bdira, F.B, Volkov, A.N, Dame, R.T.
Deposit date:2020-04-22
Release date:2021-05-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel anti-repression mechanism of H-NS proteins by a phage protein.
Nucleic Acids Res., 49, 2021
2V20
DownloadVisualize
BU of 2v20 by Molmil
Structure of a TEM-1 beta-lactamase insertant allosterically regulated by kanamycin and anions. Complex with sulfate.
Descriptor: BETA-LACTAMASE TEM, SULFATE ION, ZINC ION
Authors:Evrard, C, Barrios, H, Mathonet, P, Soumillion, P, Fastrez, J, Declercq, J.P.
Deposit date:2007-05-31
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Engineering an Allosteric Binding Site for Aminoglycosides Into Tem1-Beta-Lactamase.
Chembiochem, 12, 2011
2V1Z
DownloadVisualize
BU of 2v1z by Molmil
Structure of a TEM-1 beta-lactamase insertant allosterically regulated by kanamycin and anions.
Descriptor: BETA-LACTAMASE TEM, ZINC ION
Authors:Evrard, C, Barrios, H, Mathonet, P, Soumillion, P, Fastrez, J, Declercq, J.P.
Deposit date:2007-05-31
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering an Allosteric Binding Site for Aminoglycosides Into Tem1-Beta-Lactamase.
Chembiochem, 12, 2011
4JB4
DownloadVisualize
BU of 4jb4 by Molmil
Expression, Purification, Characterization, and Solution NMR Study of Highly Deuterated Yeast Cytochrome c Peroxidase with Enhanced Solubility
Descriptor: Cytochrome c peroxidase, mitochondrial, FLUORIDE ION, ...
Authors:Wohlkonig, A.C.
Deposit date:2013-02-19
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Expression, purification, characterization, and solution nuclear magnetic resonance study of highly deuterated yeast cytochrome C peroxidase with enhanced solubility.
Biochemistry, 52, 2013
7R5A
DownloadVisualize
BU of 7r5a by Molmil
Vibrio cholera ParD2:ParE2 antitoxin:toxin complex
Descriptor: Antitoxin ParD, Toxin
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2022-02-10
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Toxin:antitoxin ratio sensing autoregulation of the Vibrio cholerae parDE2 module.
Sci Adv, 10, 2024
8Q7C
DownloadVisualize
BU of 8q7c by Molmil
Cryo-EM structure of Adenovirus C5 hexon
Descriptor: Hexon protein
Authors:Zoll, S, Dhillon, A.
Deposit date:2023-08-16
Release date:2023-08-30
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into the interaction between adenovirus C5 hexon and human lactoferrin.
J.Virol., 98, 2024
4LOV
DownloadVisualize
BU of 4lov by Molmil
Crystal structure of FimH in complex with Heptylmannoside
Descriptor: GLYCEROL, Protein FimH, SODIUM ION, ...
Authors:Garcia-Pino, A, Vanwetswinkel, S, van Nuland, N.
Deposit date:2013-07-13
Release date:2014-02-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Study of the Structural and Dynamic Effects in the FimH Adhesin upon alpha-d-Heptyl Mannose Binding.
J.Med.Chem., 57, 2014
8CN1
DownloadVisualize
BU of 8cn1 by Molmil
hDLG1-PDZ1 in complex with a TAX1 peptide from HTLV-1
Descriptor: Disks large homolog 1, GLU-THR-GLU-VAL, SULFATE ION
Authors:Maseko, S, Sogues, A, Volkov, A, Remaut, H, Twizere, J.C.
Deposit date:2023-02-21
Release date:2023-08-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Identification of small molecule antivirals against HTLV-1 by targeting the hDLG1-Tax-1 protein-protein interaction.
Antiviral Res., 217, 2023
8CN3
DownloadVisualize
BU of 8cn3 by Molmil
hDLG1-PDZ2 in complex with a TAX1 peptide from HTLV-1
Descriptor: Disks large homolog 1, GLU-THR-GLU-VAL
Authors:Maseko, S, Sogues, A, Volkov, A, Remaut, H, Twizere, J.C.
Deposit date:2023-02-21
Release date:2023-08-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Identification of small molecule antivirals against HTLV-1 by targeting the hDLG1-Tax-1 protein-protein interaction.
Antiviral Res., 217, 2023
2N18
DownloadVisualize
BU of 2n18 by Molmil
Dominant form of the low-affinity complex of yeast cytochrome c and cytochrome c peroxidase
Descriptor: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
Authors:Volkov, A, Van de Water, K.
Deposit date:2015-03-24
Release date:2015-05-13
Last modified:2015-05-20
Method:SOLUTION NMR
Cite:The low-affinity complex of cytochrome c and its peroxidase.
Nat Commun, 6, 2015
7B22
DownloadVisualize
BU of 7b22 by Molmil
Vibrio cholerae ParD2 Antitoxin
Descriptor: Antitoxin ParD
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-11-25
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin.
Acta Crystallogr D Struct Biol, 77, 2021
3ZPD
DownloadVisualize
BU of 3zpd by Molmil
Solution structure of the FimH adhesin carbohydrate-binding domain
Descriptor: FIMH
Authors:van Nuland, N.A.J, Vanwetswinkel, S, Vranken, W.F, Buts, L.
Deposit date:2013-02-27
Release date:2014-02-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Study of the Structural and Dynamic Effects in the Fimh Adhesin Upon Alpha-D-Heptyl Mannose Binding.
J.Med.Chem., 57, 2014
3ZBE
DownloadVisualize
BU of 3zbe by Molmil
E. coli O157 ParE2-associated antitoxin 2 (PaaA2)
Descriptor: PAAA2
Authors:Sterckx, Y.G.J, Van Nuland, N.A.J, Vranken, W.F, Loris, R.
Deposit date:2012-11-08
Release date:2014-01-15
Last modified:2024-01-31
Method:SOLUTION NMR
Cite:Small-Angle X-Ray Scattering- and Nuclear Magnetic Resonance-Derived Conformational Ensemble of the Highly Flexible Antitoxin Paaa2.
Structure, 22, 2014
7VUU
DownloadVisualize
BU of 7vuu by Molmil
Crystal structure of AlleyCat10 with inhibitor
Descriptor: 5-nitro-1H-benzotriazole, AlleyCat, CALCIUM ION
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUT
DownloadVisualize
BU of 7vut by Molmil
Crystal structure of AlleyCat10
Descriptor: AlleyCat10, CALCIUM ION
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUS
DownloadVisualize
BU of 7vus by Molmil
Crystal structure of AlleyCat9 with 5-nitro-benzotriazole
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-nitro-1H-benzotriazole, AlleyCat, ...
Authors:Tame, J.R.H, Korendovych, I.V, Margheritis, E, Takahashi, K.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUR
DownloadVisualize
BU of 7vur by Molmil
Crystal structure of AlleyCat9 with calcium but no inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, AlleyCat, CALCIUM ION
Authors:Margheritis, E, Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUC
DownloadVisualize
BU of 7vuc by Molmil
Myoglobin mutant L29I/H64G/V68A
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-02
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon