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5ORE
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) OCCJ FROM AGROBACTERIUM TUMEFACIENS B6
Descriptor:Octopine-binding periplasmic protein, 1,2-ETHANEDIOL, CHLORIDE ION
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5ORG
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) OCCJ FROM A. TUMEFACIENS B6 IN COMPLEX WITH OCTOPINE.
Descriptor:Octopine-binding periplasmic protein, 1,2-ETHANEDIOL, SODIUM ION, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT8
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT-G97S MUTANT FROM A. TUMEFACIENS C58 IN COMPLEX WITH OCTOPINE.
Descriptor:Nopaline-binding periplasmic protein, octopine, 1,2-ETHANEDIOL, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT9
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT FROM A.TUMEFACIENS C58 IN COMPLEX WITH HISTOPINE.
Descriptor:Nopaline-binding periplasmic protein, 1,2-ETHANEDIOL, Histopine
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTA
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT FROM AGROBACTERIUM TUMEFACIENS C58 IN COMPLEX WITH OCTOPINIC ACID
Descriptor:Nopaline-binding periplasmic protein, (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid, 1,2-ETHANEDIOL
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTC
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) NOCT FROM AGROBACTERIUM TUMEFACIENS C58 IN COMPLEX WITH NOROCTOPINIC ACID.
Descriptor:Nopaline-binding periplasmic protein, (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OVZ
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HIGH RESOLUTION STRUCTURE OF THE PBP NOCT IN COMPLEX WITH NOPALINE
Descriptor:Nopaline-binding periplasmic protein, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-08-30
Release date:2018-10-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:How to be a highly affine octopine binding protein to exploit the constructued octopine-niche on plant host
To Be Published
6FT2
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN LAO-Q122A IN COMPLEX WITH ARGININE.
Descriptor:Lysine/arginine/ornithine-binding periplasmic protein, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2018-02-20
Release date:2018-03-28
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure of the periplasmic binding protein LAO-Q122A A in complex with arginin
To Be Published
5ITO
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN M117N-NOCT FROM A. TUMEFACIENS IN COMPLEX WITH OCTOPINE
Descriptor:Nopaline-binding periplasmic protein, DI(HYDROXYETHYL)ETHER, 1,2-ETHANEDIOL, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
4P0I
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STRUCTURE OF THE PBP NOCT
Descriptor:Nopaline-binding periplasmic protein, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER
Authors:Vigouroux, A., Morera, S.
Deposit date:2014-02-21
Release date:2014-10-22
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5ITP
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN NOCT FROM A.TUMEFACIENS IN COMPLEX WITH OCTOPINE
Descriptor:Nopaline-binding periplasmic protein, octopine, 1,2-ETHANEDIOL, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
6R5S
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STRUCTURE OF THE SBP FPVC FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH FE(II)
Descriptor:Adhesion protein, FE (II) ION, 1,2-ETHANEDIOL
Authors:Morera, S., Vigouroux, A.
Deposit date:2019-03-25
Release date:2019-07-31
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 2019
6R6K
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STRUCTURE OF A FPVC MUTANT FROM PSEUDOMONAS AERUGINOSA
Descriptor:ABC transporter substrate-binding protein, SODIUM ION, 1,2-ETHANEDIOL, ...
Authors:Morera, S., Vigouroux, A.
Deposit date:2019-03-27
Release date:2019-07-31
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 2019
6RU4
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STRUCTURE OF THE SBP FPVC FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH MN2+
Descriptor:Probable adhesion protein, MANGANESE (II) ION, 1,2-ETHANEDIOL, ...
Authors:Morera, S., Vigouroux, A.
Deposit date:2019-05-27
Release date:2019-07-31
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 2019
5HDJ
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STRUCTURE OF B. MEGATERIUM NFRA1
Descriptor:NfrA1, FLAVIN MONONUCLEOTIDE, 1,2-ETHANEDIOL
Authors:Vigouroux, A., Morera, S.
Deposit date:2016-01-05
Release date:2016-04-06
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
5HEI
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STRUCTURE OF B. MEGATERIUM NFRA2
Descriptor:NfrA2, FLAVIN MONONUCLEOTIDE, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2016-01-06
Release date:2016-04-06
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
6EPZ
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN MELB (ATU4661) IN COMPLEX WITH MELIBIOSE FROM AGROBACTERIUM FABRUM C58
Descriptor:Periplasmic alpha-galactoside-binding protein, 6-O-alpha-D-galactopyranosyl-alpha-D-glucopyranose, MAGNESIUM ION, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ0
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) MELB (ATU4661) IN COMPLEX WITH GALACTOSE FROM AGROBACTERIUM TUMEFACIEN C58
Descriptor:Periplasmic alpha-galactoside-binding protein, ALPHA D-GALACTOSE, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ1
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) MELB (ATU4661) IN COMPLEX WITH STACHYOSE FROM AGROBACTERIUM FABRUM C58
Descriptor:Periplasmic alpha-galactoside-binding protein, TETRAETHYLENE GLYCOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ8
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STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN (PBP) MELB (ATU4661) IN COMPLEX WITH GALACTINOL FROM AGROBACTERIUM FABRUM C58
Descriptor:Periplasmic alpha-galactoside-binding protein, 1,2-ETHANEDIOL, galactinol, ...
Authors:Vigouroux, A., Morera, S.
Deposit date:2017-10-12
Release date:2018-04-18
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
1RER
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CRYSTAL STRUCTURE OF THE HOMOTRIMER OF FUSION GLYCOPROTEIN E1 FROM SEMLIKI FOREST VIRUS.
Descriptor:Structural polyprotein, N-ACETYL-D-GLUCOSAMINE, BETA-L-FUCOSE, ...
Authors:Gibbons, D.L., Vaney, M.C., Roussel, A., Vigouroux, A., Reilly, B., Kielian, M., Rey, F.A.
Deposit date:2003-11-07
Release date:2004-01-27
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus.
Nature, 427, 2004
3GZK
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STRUCTURE OF A. ACIDOCALDARIUS CELLULASE CELA
Descriptor:Cellulase, CALCIUM ION, ZINC ION, ...
Authors:Morera, S., Eckert, K., Vigouroux, A.
Deposit date:2009-04-07
Release date:2009-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of A. acidocaldarius endoglucanase Cel9A in complex with cello-oligosaccharides: strong -1 and -2 subsites mimic cellobiohydrolase activity
J.Mol.Biol., 394, 2009
3H2W
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STRUCTURE OF A. ACIDOCALDARIUS CELLULASE CELA IN COMPLEX WITH CELLOBIOSE
Descriptor:Cellulase, BETA-D-GLUCOSE, ALPHA-D-GLUCOSE, ...
Authors:Morera, S., Vigouroux, A.
Deposit date:2009-04-14
Release date:2009-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structures of A. acidocaldarius endoglucanase Cel9A in complex with Cello-oligosaccharides: strong -1 and -2 subsites mimic cellobiohydrolase activity
J.Mol.Biol., 394, 2009
5CFG
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C2 CRYSTAL FORM OF APE1 WITH MG2+
Descriptor:DNA-(apurinic or apyrimidinic site) lyase, MAGNESIUM ION
Authors:Morera, S., Vigouroux, A.
Deposit date:2015-07-08
Release date:2016-07-06
Last modified:2016-10-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA.
Biochimie, 128-129, 2016
4K1G
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STRUCTURE OF E. COLI NFO(ENDO IV)-H69A MUTANT BOUND TO A CLEAVED DNA DUPLEX CONTAINING A ALPHADA:T BASEPAIR
Descriptor:Endonuclease 4, DNA (5'-D(*GP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*CP*GP*TP*CP*GP*TP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3'), ...
Authors:Morera, S., Vigouroux, A.
Deposit date:2013-04-05
Release date:2013-07-31
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases.
Proc.Natl.Acad.Sci.USA, 110, 2013