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2KOI
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REFINED SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE
分子名称:Sensor protein, PHYCOCYANOBILIN
著者Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)
登録日2009-09-22
公開日2009-11-03
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Structural basis for the photoconversion of a phytochrome to the activated Pfr form
Nature, 463, 2010
1ZTU
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STRUCTURE OF THE CHROMOPHORE BINDING DOMAIN OF BACTERIAL PHYTOCHROME
分子名称:Bacteriophytochrome, BILIVERDINE IX ALPHA
著者Wagner, J.R., Brunzelle, J.S., Forest, K.T., Vierstra, R.D.
登録日2005-05-27
公開日2005-11-15
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
Nature, 438, 2005
2AAK
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UBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANA
分子名称:UBIQUITIN CONJUGATING ENZYME
著者Cook, W.J., Jeffrey, L.C., Sullivan, M.L., Vierstra, R.D.
登録日1997-11-06
公開日1998-03-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Three-dimensional structure of a ubiquitin-conjugating enzyme (E2).
J.Biol.Chem., 267, 1992
2K2N
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SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE
分子名称:Sensor protein, PHYCOCYANOBILIN
著者Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
登録日2008-04-04
公開日2008-09-23
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
J.Mol.Biol., 383, 2008
2KLI
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STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM
分子名称:Sensor protein, PHYCOCYANOBILIN
著者Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Zhang, J., Rivera, M., Vierstra, R.D., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)
登録日2009-07-03
公開日2009-11-03
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Structural basis for the photoconversion of a phytochrome to the activated Pfr form
Nature, 463, 2010
2LB5
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REFINED STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM
分子名称:Sensor histidine kinase, PHYCOCYANOBILIN
著者Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
登録日2011-03-23
公開日2011-06-29
最終更新日2014-01-01
実験手法SOLUTION NMR
主引用文献Structural basis for the photoconversion of a phytochrome to the activated Pfr form.
Nature, 463, 2010
2LB9
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REFINED SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE (CORRECTED PYRROLE RING PLANARITY)
分子名称:Sensor histidine kinase, PHYCOCYANOBILIN
著者Cornilescu, C.C., Cornilescu, G., Ulijasz, A.T., Vierstra, R.D., Markley, J.L.
登録日2011-03-23
公開日2011-06-29
最終更新日2014-01-01
実験手法SOLUTION NMR
主引用文献Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
J.Mol.Biol., 383, 2008
2O9B
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CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Wagner, J.R., Brunzelle, J.S., Vierstra, R.D., Forest, K.T.
登録日2006-12-13
公開日2007-03-06
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
J.Biol.Chem., 282, 2007
2O9C
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CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN AT 1.45 ANGSTROM RESOLUTION
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Wagner, J.R., Brunzelle, J.S., Vierstra, R.D., Forest, K.T.
登録日2006-12-13
公開日2007-03-06
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
J.Biol.Chem., 282, 2007
4FOF
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CRYSTAL STRUCTURE OF THE BLUE-LIGHT ABSORBING FORM OF THE THERMOSYNECHOCOCCUS ELONGATUS PIXJ GAF-DOMAIN
分子名称:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form, ...
著者Burgie, E.S., Walker, J.M., Phillips Jr., G.N., Vierstra, R.D.
登録日2012-06-20
公開日2013-01-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.416 Å)
主引用文献A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes.
Structure, 21, 2013
4GLQ
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CRYSTAL STRUCTURE OF THE BLUE-LIGHT ABSORBING FORM OF THE THERMOSYNECHOCOCCUS ELONGATUS PIXJ GAF-DOMAIN
分子名称:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form
著者Burgie, E.S., Walker, J.M., Phillips Jr, G.N., Vierstra, R.D.
登録日2012-08-14
公開日2013-01-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.772 Å)
主引用文献A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes.
Structure, 21, 2013
4OUR
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CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PHYTOCHROME B PHOTOSENSORY MODULE
分子名称:Phytochrome B, SULFATE ION, GLYCEROL, ...
著者Sethe Burgie, E., Bussell, A.N., Walker, J.M., Dubiel, K., Vierstra, R.D.
登録日2014-02-18
公開日2014-07-16
最終更新日2014-07-30
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome.
Proc.Natl.Acad.Sci.USA, 111, 2014
4Q0H
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DEINOCOCCUS RADIODURANS BPHP PAS-GAF
分子名称:Bacteriophytochrome, CHLORIDE ION, ISOPROPYL ALCOHOL, ...
著者Burgie, E.S., Vierstra, R.D.
登録日2014-04-02
公開日2014-07-16
最終更新日2014-09-17
実験手法X-RAY DIFFRACTION (1.157 Å)
主引用文献Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0I
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DEINOCOCCUS RADIODURANS BPHP PAS-GAF D207A MUTANT
分子名称:Bacteriophytochrome, ISOPROPYL ALCOHOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Burgie, E.S., Vierstra, R.D.
登録日2014-04-02
公開日2014-07-16
最終更新日2014-09-17
実験手法X-RAY DIFFRACTION (1.744 Å)
主引用文献Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Q0J
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DEINOCOCCUS RADIODURANS BPHP PHOTOSENSORY MODULE
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Burgie, E.S., Vierstra, R.D.
登録日2014-04-02
公開日2014-07-16
最終更新日2014-09-17
実験手法X-RAY DIFFRACTION (2.747 Å)
主引用文献Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
J.Biol.Chem., 289, 2014
4Y3I
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PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, LOW DOSE
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
登録日2015-02-10
公開日2015-05-20
最終更新日2017-09-06
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4Y5F
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PAS-GAF FRAGMENT FROM DEINOCOCCUS RADIODURANS BPHP ASSEMBLED WITH BV - Y307S, HIGH DOSE
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.
登録日2015-02-11
公開日2015-05-20
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
5C5K
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STRUCTURE OF THE PFR FORM OF A CANONICAL PHYTOCHROME
分子名称:Bacteriophytochrome, BILIVERDINE IX ALPHA, 1,2-ETHANEDIOL, ...
著者Burgie, E.S., Vierstra, R.D.
登録日2015-06-20
公開日2016-02-17
最終更新日2017-09-20
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
Structure, 24, 2016
5MG0
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STRUCTURE OF PAS-GAF FRAGMENT OF DEINOCOCCUS PHYTOCHROME BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, NICKEL (II) ION, ...
著者Burgie, E.S., Fuller, F.D., Gul, S., Miller, M.D., Young, I.D., Brewster, A.S., Clinger, J., Aller, P., Braeuer, P., Hutchison, C., Alonso-Mori, R., Kern, J., Yachandra, V.K., Yano, J., Sauter, N.K., Phillips Jr., G.N., Vierstra, R.D., Orville, A.M.
登録日2016-11-20
公開日2017-02-22
最終更新日2018-11-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
5MG1
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STRUCTURE OF THE PHOTOSENSORY MODULE OF DEINOCOCCUS PHYTOCHROME BY SERIAL FEMTOSECOND X-RAY CRYSTALLOGRAPHY
分子名称:Bacteriophytochrome, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
著者Burgie, E.S., Fuller, F.D., Gul, S., Young, I.D., Brewster, A.S., Clinger, J., Andi, B., Stan, C., Allaire, M., Nelsen, S., Alonso-Mori, R., Phillips Jr., G.N., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J., Vierstra, R.D., Orville, A.M.
登録日2016-11-20
公開日2017-02-22
最終更新日2018-11-14
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.
Nat. Methods, 14, 2017
2M7U
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BLUE LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
分子名称:Methyl-accepting chemotaxis protein, Phycoviolobilin, blue light-absorbing form
著者Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
登録日2013-05-01
公開日2014-01-01
実験手法SOLUTION NMR
主引用文献Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
2M7V
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GREEN LIGHT-ABSORBING STATE OF TEPIXJ, AN ACTIVE CYANOBACTERIOCHROME DOMAIN
分子名称:Methyl-accepting chemotaxis protein, PHYCOVIOLOBILIN
著者Cornilescu, G., Cornilescu, C.C., Burgie, S.E., Walker, J.M., Markley, J.L., Ulijasz, A.T., Vierstra, R.D.
登録日2013-05-01
公開日2014-01-01
実験手法SOLUTION NMR
主引用文献Structural and Flexibility Variations Between the Ground and Photoactivated States of a Blue/Green Light-Absorbing Cyanobacteriochrome
To be Published
1UBI
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SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1
分子名称:UBIQUITIN
著者Alexeev, D., Bury, S.M., Turner, M.A., Ogunjobi, O.M., Muir, T.W., Ramage, R., Sawyer, L.
登録日1994-02-03
公開日1994-05-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin.
Biochem.J., 299, 1994
1UBQ
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STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
分子名称:UBIQUITIN
著者Vijay-Kumar, S., Bugg, C.E., Cook, W.J.
登録日1987-01-02
公開日1987-04-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987