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7PQP
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BU of 7pqp by Molmil
tau-microtubule structural ensemble based on CryoEM data
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Isoform Tau-F of Microtubule-associated protein tau, ...
Authors:Brotzakis, Z.F, Vendruscolo, M.
Deposit date:2021-09-18
Release date:2021-12-15
Last modified:2022-01-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:A Structural Ensemble of a Tau-Microtubule Complex Reveals Regulatory Tau Phosphorylation and Acetylation Mechanisms.
Acs Cent.Sci., 7, 2021
7PQC
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BU of 7pqc by Molmil
tau-microtubule structural ensemble based on CryoEM data
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Isoform Tau-F of Microtubule-associated protein tau, ...
Authors:Brotzakis, Z.F, Vendruscolo, M.
Deposit date:2021-09-16
Release date:2021-12-15
Last modified:2022-01-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:A Structural Ensemble of a Tau-Microtubule Complex Reveals Regulatory Tau Phosphorylation and Acetylation Mechanisms.
Acs Cent.Sci., 7, 2021
5J0M
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BU of 5j0m by Molmil
Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat
Descriptor: Apical region (29-mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat
Authors:Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M.
Deposit date:2016-03-28
Release date:2016-06-08
Last modified:2019-10-23
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
5J1O
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BU of 5j1o by Molmil
Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat
Descriptor: Apical region (29mer) of the HIV-1 TAR element, Cyclic peptide mimetic of Tat
Authors:Borkar, A.N, Bardaro, M.F, Varani, G, Vendruscolo, M.
Deposit date:2016-03-29
Release date:2016-06-08
Last modified:2019-10-23
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
5J2W
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BU of 5j2w by Molmil
Intermediate state lying on the pathway of release of Tat from HIV-1 TAR.
Descriptor: Apical region (29mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat
Authors:Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M.
Deposit date:2016-03-30
Release date:2016-06-08
Last modified:2019-10-23
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
1XQQ
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BU of 1xqq by Molmil
Simultaneous determination of protein structure and dynamics
Descriptor: ubiquitin
Authors:Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M.
Deposit date:2004-10-13
Release date:2005-02-08
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Simultaneous determination of protein structure and dynamics
Nature, 433, 2005
3ZPK
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BU of 3zpk by Molmil
Atomic-resolution structure of a quadruplet cross-beta amyloid fibril.
Descriptor: TRANSTHYRETIN
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S.A, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-28
Release date:2013-12-04
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY, SOLID-STATE NMR
Cite:Atomic Structure and Hierarchical Assembly of a Cross-Beta Amyloid Fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
6O2T
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BU of 6o2t by Molmil
Acetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2S
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BU of 6o2s by Molmil
Deacetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2R
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BU of 6o2r by Molmil
Deacetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2Q
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BU of 6o2q by Molmil
Acetylated Microtubules
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Eshun-Wilson, L, Zhang, R, Portran, D, Nachury, M.V, Toso, D, Lohr, T, Vendruscolo, M, Bonomi, M, Fraser, J.S, Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6G4A
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BU of 6g4a by Molmil
FLN5 (full length)
Descriptor: Gelation factor
Authors:Waudby, C.A, Wlodarski, T, Karyadi, M.-E, Cassaignau, A.M.E, Chan, S.H.S, Wentink, A.S, Schmidt-Engler, J.M, Camilloni, C, Vendruscolo, M, Cabrita, L.D, Christodoulou, J.
Deposit date:2018-03-27
Release date:2019-04-10
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Mapping energy landscapes of a growing filamin domain reveals an intermediate associated with proline isomerization during biosynthesis
To Be Published
2K0P
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BU of 2k0p by Molmil
Determination of a Protein Structure in the Solid State from NMR Chemical Shifts
Descriptor: Immunoglobulin G-binding protein G
Authors:Robustelli, P, Cavalli, A, Salvatella, X, Vendruscolo, M.
Deposit date:2008-02-11
Release date:2009-03-03
Last modified:2021-10-20
Method:SOLID-STATE NMR
Cite:Determination of protein structures in the solid state from NMR chemical shifts.
Structure, 16, 2008
2LPF
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BU of 2lpf by Molmil
R state structure of monomeric phospholamban (C36A, C41F, C46A)
Descriptor: Cardiac phospholamban
Authors:De Simone, A, Montalvao, R.W, Gustavsson, M, Shi, L, Veglia, G, Vendruscolo, M.
Deposit date:2012-02-11
Release date:2013-02-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures of the Excited States of Phospholamban and Shifts in Their Populations upon Phosphorylation.
Biochemistry, 52, 2013
2L2P
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BU of 2l2p by Molmil
Folding Intermediate of the Fyn SH3 A39V/N53P/V55L from NMR Relaxation Dispersion Experiments
Descriptor: Tyrosine-protein kinase Fyn
Authors:Neudecker, P, Robustelli, P, Cavalli, A, Vendruscolo, M, Kay, L.E.
Deposit date:2010-08-25
Release date:2011-09-14
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Structure of an intermediate state in protein folding and aggregation.
Science, 336, 2012
2MOR
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BU of 2mor by Molmil
A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings
Descriptor: Ubiquitin
Authors:Camilloni, C, Vendruscolo, M.
Deposit date:2014-04-29
Release date:2014-06-25
Last modified:2015-02-04
Method:SOLUTION NMR
Cite:A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings.
J.Phys.Chem.B, 119, 2015
2K0E
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BU of 2k0e by Molmil
A Coupled Equilibrium Shift Mechanism in Calmodulin-Mediated Signal Transduction
Descriptor: CALCIUM ION, Calmodulin
Authors:Gsponer, J, Christodoulou, J, Cavalli, A, Bui, J.M, Richter, B, Dobson, C.M, Vendruscolo, M.
Deposit date:2008-02-02
Release date:2008-06-10
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
2K0F
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BU of 2k0f by Molmil
Calmodulin complexed with calmodulin-binding peptide from smooth muscle myosin light chain kinase
Descriptor: 19-mer peptide from Myosin light chain kinase, CALCIUM ION, calmodulin
Authors:Gsponer, J, Christodoulou, J, Cavalli, A, Bui, J.M, Richter, B, Dobson, C.M, Vendruscolo, M.
Deposit date:2008-02-02
Release date:2008-06-10
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
2K5X
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BU of 2k5x by Molmil
Chemical shift structure of COLICIN E9 DNASE domain with its cognate immunity protein IM9
Descriptor: Colicin-E9, Colicin-E9 immunity protein
Authors:Montalvao, R.W, Cavalli, A, Vendruscolo, M.
Deposit date:2008-07-01
Release date:2008-12-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure Determination of Protein-Protein Complexes Using NMR Chemical Shifts: Case of an Endonuclease Colicin-Immunity Protein Complex
J.Am.Chem.Soc., 130, 2008
2LJ5
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BU of 2lj5 by Molmil
Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings
Descriptor: Ubiquitin
Authors:De Simone, A, Montalvao, R, Vendruscolo, M.
Deposit date:2011-09-06
Release date:2012-07-18
Last modified:2012-08-08
Method:SOLUTION NMR
Cite:Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings.
J.Biomol.Nmr, 53, 2012
2LP5
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BU of 2lp5 by Molmil
Native Structure of the Fyn SH3 A39V/N53P/V55L
Descriptor: Tyrosine-protein kinase Fyn
Authors:Neudecker, P, Robustelli, P, Cavalli, A, Vendruscolo, M, Kay, L.E.
Deposit date:2012-02-06
Release date:2012-05-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of an intermediate state in protein folding and aggregation.
Science, 336, 2012
2M5K
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BU of 2m5k by Molmil
Atomic-resolution structure of a doublet cross-beta amyloid fibril
Descriptor: Transthyretin
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (12.7 Å), SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2MEZ
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BU of 2mez by Molmil
Flexible anchoring of archaeal MBF1 on ribosomes suggests role as recruitment factor
Descriptor: Multiprotein Bridging Factor (MBP-like)
Authors:Launay, H, Blombarch, F, Camilloni, C, Vendruscolo, M, van des Oost, J, Christodoulou, J.
Deposit date:2013-10-03
Release date:2014-06-25
Last modified:2014-08-20
Method:SOLUTION NMR
Cite:Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.
Biochem.J., 462, 2014
2M5N
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BU of 2m5n by Molmil
Atomic-resolution structure of a cross-beta protofilament
Descriptor: Transthyretin
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-07-17
Last modified:2023-06-14
Method:SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-{beta} amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5M
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BU of 2m5m by Molmil
Atomic-resolution structure of a triplet cross-beta amyloid fibril
Descriptor: Transthyretin
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (12.2 Å), SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

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