Author results

2K0P
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DETERMINATION OF A PROTEIN STRUCTURE IN THE SOLID STATE FROM NMR CHEMICAL SHIFTS
Descriptor:Immunoglobulin G-binding protein G
Authors:Robustelli, P., Cavalli, A., Salvatella, X., Vendruscolo, M.
Deposit date:2008-02-11
Release date:2009-03-03
Last modified:2011-07-13
Method:SOLID-STATE NMR
Cite:Determination of protein structures in the solid state from NMR chemical shifts.
Structure, 16, 2008
2LPF
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R STATE STRUCTURE OF MONOMERIC PHOSPHOLAMBAN (C36A, C41F, C46A)
Descriptor:Cardiac phospholamban
Authors:De Simone, A., Montalvao, R.W., Gustavsson, M., Shi, L., Veglia, G., Vendruscolo, M.
Deposit date:2012-02-11
Release date:2013-02-13
Last modified:2013-10-09
Method:SOLUTION NMR
Cite:Structures of the Excited States of Phospholamban and Shifts in Their Populations upon Phosphorylation.
Biochemistry, 52, 2013
6O2Q
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ACETYLATED MICROTUBULES
Descriptor:Tubulin alpha-1B chain, Tubulin beta chain, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Eshun-Wilson, L., Zhang, R., Portran, D., Nachury, M.V., Toso, D., Lohr, T., Vendruscolo, M., Bonomi, M., Fraser, J.S., Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2019-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2R
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DEACETYLATED MICROTUBULES
Descriptor:Tubulin alpha-1B chain, Tubulin beta chain, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Eshun-Wilson, L., Zhang, R., Portran, D., Nachury, M.V., Toso, D., Lohr, T., Vendruscolo, M., Bonomi, M., Fraser, J.S., Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2019-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2S
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DEACETYLATED MICROTUBULES
Descriptor:Tubulin alpha-1B chain, Tubulin beta chain, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Eshun-Wilson, L., Zhang, R., Portran, D., Nachury, M.V., Toso, D., Lohr, T., Vendruscolo, M., Bonomi, M., Fraser, J.S., Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2019-06-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
6O2T
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ACETYLATED MICROTUBULES
Descriptor:Tubulin alpha-1B chain, Tubulin beta chain, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Eshun-Wilson, L., Zhang, R., Portran, D., Nachury, M.V., Toso, D., Lohr, T., Vendruscolo, M., Bonomi, M., Fraser, J.S., Nogales, E.
Deposit date:2019-02-24
Release date:2019-05-22
Last modified:2019-06-05
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Effects of alpha-tubulin acetylation on microtubule structure and stability.
Proc.Natl.Acad.Sci.USA, 116, 2019
2MOR
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A TENSOR-FREE METHOD FOR THE STRUCTURAL AND DYNAMICAL REFINEMENT OF PROTEINS USING RESIDUAL DIPOLAR COUPLINGS
Descriptor:Ubiquitin
Authors:Camilloni, C., Vendruscolo, M.
Deposit date:2014-04-29
Release date:2014-06-25
Last modified:2015-02-04
Method:SOLUTION NMR
Cite:A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings.
J.Phys.Chem.B, 119, 2015
1XQQ
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SIMULTANEOUS DETERMINATION OF PROTEIN STRUCTURE AND DYNAMICS
Descriptor:ubiquitin
Authors:Lindorff-Larsen, K., Best, R.B., DePristo, M.A., Vendruscolo, M., Dobson, C.M.
Deposit date:2004-10-13
Release date:2005-02-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Simultaneous determination of protein structure and dynamics
Nature, 433, 2005
2K0E
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A COUPLED EQUILIBRIUM SHIFT MECHANISM IN CALMODULIN-MEDIATED SIGNAL TRANSDUCTION
Descriptor:Calmodulin, CALCIUM ION
Authors:Gsponer, J., Christodoulou, J., Cavalli, A., Bui, J.M., Richter, B., Dobson, C.M., Vendruscolo, M.
Deposit date:2008-02-02
Release date:2008-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
2K0F
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CALMODULIN COMPLEXED WITH CALMODULIN-BINDING PEPTIDE FROM SMOOTH MUSCLE MYOSIN LIGHT CHAIN KINASE
Descriptor:calmodulin, 19-mer peptide from Myosin light chain kinase, CALCIUM ION
Authors:Gsponer, J., Christodoulou, J., Cavalli, A., Bui, J.M., Richter, B., Dobson, C.M., Vendruscolo, M.
Deposit date:2008-02-02
Release date:2008-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction
Structure, 16, 2008
2K5X
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CHEMICAL SHIFT STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9
Descriptor:Colicin-E9 immunity protein, Colicin-E9
Authors:Montalvao, R.W., Cavalli, A., Vendruscolo, M.
Deposit date:2008-07-01
Release date:2008-12-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure Determination of Protein-Protein Complexes Using NMR Chemical Shifts: Case of an Endonuclease Colicin-Immunity Protein Complex
J.Am.Chem.Soc., 130, 2008
2L2P
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FOLDING INTERMEDIATE OF THE FYN SH3 A39V/N53P/V55L FROM NMR RELAXATION DISPERSION EXPERIMENTS
Descriptor:Tyrosine-protein kinase Fyn
Authors:Neudecker, P., Robustelli, P., Cavalli, A., Vendruscolo, M., Kay, L.E.
Deposit date:2010-08-25
Release date:2011-09-14
Last modified:2012-05-16
Method:SOLUTION NMR
Cite:Structure of an intermediate state in protein folding and aggregation.
Science, 336, 2012
2LJ5
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DESCRIPTION OF THE STRUCTURAL FLUCTUATIONS OF PROTEINS FROM STRUCTURE-BASED CALCULATIONS OF RESIDUAL DIPOLAR COUPLINGS
Descriptor:Ubiquitin
Authors:De Simone, A., Montalvao, R., Vendruscolo, M.
Deposit date:2011-09-06
Release date:2012-07-18
Last modified:2012-08-08
Method:SOLUTION NMR
Cite:Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings.
J.Biomol.Nmr, 53, 2012
2LP5
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NATIVE STRUCTURE OF THE FYN SH3 A39V/N53P/V55L
Descriptor:Tyrosine-protein kinase Fyn
Authors:Neudecker, P., Robustelli, P., Cavalli, A., Vendruscolo, M., Kay, L.E.
Deposit date:2012-02-06
Release date:2012-05-16
Method:SOLUTION NMR
Cite:Structure of an intermediate state in protein folding and aggregation.
Science, 336, 2012
2M5K
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ATOMIC-RESOLUTION STRUCTURE OF A DOUBLET CROSS-BETA AMYLOID FIBRIL
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2018-07-18
Method:SOLID-STATE NMR (12.7 Å), ELECTRON MICROSCOPY
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5M
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ATOMIC-RESOLUTION STRUCTURE OF A TRIPLET CROSS-BETA AMYLOID FIBRIL
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2018-07-18
Method:SOLID-STATE NMR (12.2 Å), ELECTRON MICROSCOPY
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5N
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ATOMIC-RESOLUTION STRUCTURE OF A CROSS-BETA PROTOFILAMENT
Descriptor:Transthyretin
Authors:Fitzpatrick, A.W.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-07-17
Method:SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-{beta} amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2MEZ
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FLEXIBLE ANCHORING OF ARCHAEAL MBF1 ON RIBOSOMES SUGGESTS ROLE AS RECRUITMENT FACTOR
Descriptor:Multiprotein Bridging Factor (MBP-like)
Authors:Launay, H., Blombarch, F., Camilloni, C., Vendruscolo, M., van des Oost, J., Christodoulou, J.
Deposit date:2013-10-03
Release date:2014-06-25
Last modified:2014-08-20
Method:SOLUTION NMR
Cite:Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.
Biochem.J., 462, 2014
2N1T
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DYNAMIC BINDING MODE OF A SYNAPTOTAGMIN-1-SNARE COMPLEX IN SOLUTION
Descriptor:Vesicle-associated membrane protein 2, Syntaxin-1A, Synaptosomal-associated protein 25, ...
Authors:Brewer, K., Bacaj, T., Cavalli, A., Camilloni, C., Swarbrick, J., Liu, J., Zhou, A., Zhou, P., Barlow, N., Xu, J., Seven, A., Prinslow, E., Voleti, R., Haussinger, D., Bonvin, A., Tomchick, D., Vendruscolo, M., Graham, B., Sudhof, T., Rizo, J.
Deposit date:2015-04-21
Release date:2015-06-03
Last modified:2015-07-22
Method:SOLUTION NMR
Cite:Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution.
Nat.Struct.Mol.Biol., 22, 2015
2N62
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DDFLN5+110
Descriptor:gelation factor, secretion monitor chimera
Authors:Cabrita, L.D., Cassaignau, A.M.E., Launay, H.M.M., Waudby, C.A., Camilloni, C., Robertson, A.L., Wang, X., Wlodarski, T., Wentink, A.S., Vendruscolo, M., Dobson, C.M., Christodoulou, J.
Deposit date:2015-08-10
Release date:2016-03-02
Last modified:2016-04-20
Method:SOLUTION NMR
Cite:A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.
Nat.Struct.Mol.Biol., 23, 2016
2NR2
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THE MUMO (MINIMAL UNDER-RESTRAINING MINIMAL OVER-RESTRAINING) METHOD FOR THE DETERMINATION OF NATIVE STATES ENSEMBLES OF PROTEINS
Descriptor:Ubiquitin
Authors:Richter, B., Gsponer, J., Varnai, P., Salvatella, X., Vendruscolo, M.
Deposit date:2006-11-01
Release date:2007-05-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
J.Biomol.Nmr, 37, 2007
3ZPK
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ATOMIC-RESOLUTION STRUCTURE OF A QUADRUPLET CROSS-BETA AMYLOID FIBRIL
Descriptor:TRANSTHYRETIN
Authors:Fitzpatrick, A.w.P., Debelouchina, G.T., Bayro, M.J., Clare, D.K., Caporini, M.A., Bajaj, V.S., Jaroniec, C.P., Wang, L., Ladizhansky, V., Muller, S.A., MacPhee, C.E., Waudby, C.A., Mott, H.R., de Simone, A., Knowles, T.P.J., Saibil, H.R., Vendruscolo, M., Orlova, E.V., Griffin, R.G., Dobson, C.M.
Deposit date:2013-02-28
Release date:2013-12-04
Last modified:2018-03-21
Method:SOLID-STATE NMR, ELECTRON MICROSCOPY
Cite:Atomic Structure and Hierarchical Assembly of a Cross-Beta Amyloid Fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
5J0M
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GROUND STATE SAMPLED DURING RDC RESTRAINED REPLICA-AVERAGED METADYNAMICS (RAM) SIMULATIONS OF THE HIV-1 TAR COMPLEXED WITH CYCLIC PEPTIDE MIMETIC OF TAT
Descriptor:Cyclic peptide mimetic of HIV-1 Tat, Apical region (29-mer) of the HIV-1 TAR RNA element
Authors:Borkar, A.N., Bardaro Jr., M.F., Varani, G., Vendruscolo, M.
Deposit date:2016-03-28
Release date:2016-06-08
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
5J1O
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EXCITED STATE (BOUND-LIKE) SAMPLED DURING RDC RESTRAINED REPLICA-AVERAGED METADYNAMICS (RAM) SIMULATIONS OF THE HIV-1 TAR COMPLEXED WITH CYCLIC PEPTIDE MIMETIC OF TAT
Descriptor:Cyclic peptide mimetic of Tat, Apical region (29mer) of the HIV-1 TAR element
Authors:Borkar, A.N., Bardaro, M.F., Varani, G., Vendruscolo, M.
Deposit date:2016-03-29
Release date:2016-06-08
Last modified:2017-02-01
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
5J2W
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INTERMEDIATE STATE LYING ON THE PATHWAY OF RELEASE OF TAT FROM HIV-1 TAR.
Descriptor:Cyclic peptide mimetic of HIV-1 Tat, Apical region (29mer) of the HIV-1 TAR RNA element
Authors:Borkar, A.N., Bardaro Jr., M.F., Varani, G., Vendruscolo, M.
Deposit date:2016-03-30
Release date:2016-06-08
Last modified:2017-02-01
Method:SOLUTION NMR
Cite:Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
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