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1A99
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PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor: 1,4-DIAMINOBUTANE, PUTRESCINE-BINDING PROTEIN
Authors:Vassylyev, D.G, Tomitori, H, Kashiwagi, K, Morikawa, K, Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998
1A2X
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COMPLEX OF TROPONIN C WITH A 47 RESIDUE (1-47) FRAGMENT OF TROPONIN I
Descriptor: CALCIUM ION, TROPONIN C, TROPONIN I
Authors:Vassylyev, D.G, Takeda, S, Wakatsuki, S, Maeda, K, Maeda, Y.
Deposit date:1998-01-13
Release date:1998-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of troponin C in complex with troponin I fragment at 2.3-A resolution.
Proc.Natl.Acad.Sci.USA, 95, 1998
2IPC
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Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer
Descriptor: Preprotein translocase SecA subunit
Authors:Vassylyev, D.G, Mori, H, Vassylyeva, M.N, Tsukazaki, T, Kimura, Y, Tahirov, T.H, Ito, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-12
Release date:2006-11-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Translocation ATPase SecA from Thermus thermophilus Reveals a Parallel, Head-to-Head Dimer.
J.Mol.Biol., 364, 2006
1VAS
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ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION
Descriptor: DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'), PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1))
Authors:Vassylyev, D.G, Kashiwagi, T, Mikami, Y, Ariyoshi, M, Iwai, S, Ohtsuka, E, Morikawa, K.
Deposit date:1995-09-08
Release date:1996-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition.
Cell(Cambridge,Mass.), 83, 1995
2O5I
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Crystal structure of the T. thermophilus RNA polymerase elongation complex
Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ...
Authors:Vassylyev, D.G, Tahirov, T.H, Vassylyeva, M.N.
Deposit date:2006-12-06
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for transcription elongation by bacterial RNA polymerase.
Nature, 448, 2007
2O5J
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Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog
Descriptor: 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', ...
Authors:Vassylyev, D.G, Vassylyeva, M.N.
Deposit date:2006-12-06
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for substrate loading in bacterial RNA polymerase.
Nature, 448, 2007
2PNQ
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Crystal structure of pyruvate dehydrogenase phosphatase 1 (PDP1)
Descriptor: MAGNESIUM ION, [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1
Authors:Vassylyev, D.G, Symersky, J.
Deposit date:2007-04-25
Release date:2007-08-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of pyruvate dehydrogenase phosphatase 1 and its functional implications.
J.Mol.Biol., 370, 2007
2PPB
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Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydigin
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3'), ...
Authors:Vassylyev, D.G, Vassylyeva, M.N, Artsimovitch, I, Landick, R.
Deposit date:2007-04-28
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for substrate loading in bacterial RNA polymerase.
Nature, 448, 2007
2BE5
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Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with inhibitor tagetitoxin
Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Vassylyev, D.G, Svetlov, V, Vassylyeva, M.N, Perederina, A, Igarashi, N, Matsugaki, N, Wakatsuki, S, Artsimovitch, I, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-22
Release date:2005-11-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for transcription inhibition by tagetitoxin
Nat.Struct.Mol.Biol., 12, 2005
1GD8
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BU of 1gd8 by Molmil
THE CRYSTAL STRUCTURE OF BACTERIA-SPECIFIC L17 RIBOSOMAL PROTEIN.
Descriptor: 50S RIBOSOMAL PROTEIN L17
Authors:Vassylyev, D.G, Shirouzu, M, Wada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-09-22
Release date:2001-09-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus.
To be Published
3EQL
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BU of 3eql by Molmil
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxopyronin
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Vassylyev, D.G, Vassylyeva, M.N, Artsimovitch, I.
Deposit date:2008-09-30
Release date:2008-10-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Transcription inactivation through local refolding of the RNA polymerase structure.
Nature, 457, 2009
2OUG
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BU of 2oug by Molmil
Crystal structure of the RfaH transcription factor at 2.1A resolution
Descriptor: Transcriptional activator rfaH
Authors:Vassylyev, D.G, Vassylyeva, M.N, Svetlov, V, Artsimovitch, I.
Deposit date:2007-02-10
Release date:2007-05-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for converting a general transcription factor into an operon-specific virulence regulator.
Mol.Cell, 26, 2007
2PNR
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BU of 2pnr by Molmil
Crystal Structure of the asymmetric Pdk3-l2 Complex
Descriptor: DIHYDROLIPOIC ACID, Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3
Authors:Vassylyev, D.G, Steussy, C.N, Devedjiev, Y.
Deposit date:2007-04-25
Release date:2007-08-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of an Asymmetric complex of Pyruvate Dehydrogenase Kinase 3 with Lipoyl domain 2 and its Biological Implications
J.Mol.Biol., 370, 2007
2END
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CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENI
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BU of 1eni by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENK
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BU of 1enk by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1ENJ
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BU of 1enj by Molmil
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
Descriptor: ENDONUCLEASE V
Authors:Vassylyev, D.G, Ariyoshi, M, Matsumoto, O, Katayanagi, K, Ohtsuka, E, Morikawa, K.
Deposit date:1994-08-08
Release date:1994-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
J.Mol.Biol., 249, 1995
1FUT
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BU of 1fut by Molmil
CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP
Descriptor: GUANOSINE-2'-MONOPHOSPHATE, RIBONUCLEASE F1
Authors:Katayanagi, K, Vassylyev, D.G, Ishikawa, K, Morikawa, K.
Deposit date:1993-01-18
Release date:1993-10-31
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
J.Mol.Biol., 230, 1993
1FUS
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BU of 1fus by Molmil
CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP
Descriptor: RIBONUCLEASE F1
Authors:Katayanagi, K, Vassylyev, D.G, Ishikawa, K, Morikawa, K.
Deposit date:1993-01-18
Release date:1993-10-31
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
J.Mol.Biol., 230, 1993
1B7Y
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PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE
Descriptor: ADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE], MAGNESIUM ION, PROTEIN (PHENYLALANYL-TRNA SYNTHETASE)
Authors:Reshetnikova, L, Moor, N, Lavrik, O, Vassylyev, D.G.
Deposit date:1999-01-26
Release date:2000-01-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of phenylalanyl-tRNA synthetase complexed with phenylalanine and a phenylalanyl-adenylate analogue.
J.Mol.Biol., 287, 1999
1AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
Descriptor: BACTERIORHODOPSIN, RETINAL
Authors:Kimura, Y, Vassylyev, D.G, Miyazawa, A, Kidera, A, Matsushima, M, Mitsuoka, K, Murata, K, Hirai, T, Fujiyoshi, Y.
Deposit date:1997-08-20
Release date:1998-09-16
Last modified:2011-07-13
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Surface of bacteriorhodopsin revealed by high-resolution electron crystallography.
Nature, 389, 1997
1B70
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BU of 1b70 by Molmil
PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINE
Descriptor: MAGNESIUM ION, PHENYLALANINE, PHENYLALANYL-TRNA SYNTHETASE
Authors:Reshetnikova, L, Moor, N, Lavrik, O, Vassylyev, D.G.
Deposit date:1999-01-26
Release date:2000-02-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of phenylalanyl-tRNA synthetase complexed with phenylalanine and a phenylalanyl-adenylate analogue
J.Mol.Biol., 287, 1999
2ZJS
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BU of 2zjs by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment
Descriptor: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ...
Authors:Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O.
Deposit date:2008-03-08
Release date:2008-10-14
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
2EUL
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BU of 2eul by Molmil
Structure of the transcription factor Gfh1.
Descriptor: ZINC ION, anti-cleavage anti-GreA transcription factor Gfh1
Authors:Symersky, J, Perederina, A, Vassylyeva, M.N, Svetlov, V, Artsimovitch, I, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-28
Release date:2005-11-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Regulation through the RNA Polymerase Secondary Channel: STRUCTURAL AND FUNCTIONAL VARIABILITY OF THE COILED-COIL TRANSCRIPTION FACTORS.
J.Biol.Chem., 281, 2006
1N75
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Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Glutamyl-tRNA synthetase, MAGNESIUM ION
Authors:Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003

 

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