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6YES
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BU of 6yes by Molmil
Crystal structure of type I-D CRISPR-Cas nuclease Cas10d
Descriptor: CRISPR-associated protein, CscA, ZINC ION
Authors:Brodersen, D.E, Van, L.B, Manav, M.C.
Deposit date:2020-03-25
Release date:2020-10-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein.
Nat Commun, 11, 2020
2P51
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BU of 2p51 by Molmil
Crystal structure of the S. pombe Pop2p deadenylation subunit
Descriptor: MAGNESIUM ION, SPCC18.06c protein
Authors:Thyssen Jonstrup, A, Andersen, K.R, Van, L.B, Brodersen, D.E.
Deposit date:2007-03-14
Release date:2007-05-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme
Nucleic Acids Res., 35, 2007
6EXP
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BU of 6exp by Molmil
Crystal structure of the SIRV3 AcrID1 (gp02) anti-CRISPR protein
Descriptor: SIRV3 AcrID1 (gp02) anti-CRISPR protein
Authors:He, F, Bhoobalan-Chitty, Y, Van, L.B, Kjeldsen, A.L, Dedola, M, Makarova, K.S, Koonin, E.V, Brodersen, D.E, Peng, X.
Deposit date:2017-11-08
Release date:2018-01-31
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity.
Nat Microbiol, 3, 2018
2HBK
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BU of 2hbk by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn
Descriptor: Exosome complex exonuclease RRP6, MANGANESE (II) ION
Authors:Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
Deposit date:2006-06-14
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBL
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BU of 2hbl by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Exosome complex exonuclease RRP6, MANGANESE (II) ION, ...
Authors:Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
Deposit date:2006-06-14
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBJ
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BU of 2hbj by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain
Descriptor: Exosome complex exonuclease RRP6
Authors:Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
Deposit date:2006-06-14
Release date:2006-07-25
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBM
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BU of 2hbm by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP
Descriptor: Exosome complex exonuclease RRP6, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
Deposit date:2006-06-14
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
3G10
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BU of 3g10 by Molmil
Structure of S. pombe Pop2p - Mg2+ and Mn2+ bound form
Descriptor: CCR4-Not complex subunit Caf1, MAGNESIUM ION, MANGANESE (II) ION
Authors:Andersen, K.R, Jonstrup, A.T, Van, L.B, Brodersen, D.E.
Deposit date:2009-01-29
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:The activity and selectivity of fission yeast Pop2p are affected by a high affinity for Zn2+ and Mn2+ in the active site
Rna, 15, 2009
3G0Z
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BU of 3g0z by Molmil
Structure of S. pombe Pop2p - Zn2+ and Mn2+ bound form
Descriptor: CCR4-Not complex subunit Caf1, MANGANESE (II) ION, ZINC ION
Authors:Andersen, K.R, Jonstrup, A.T, Van, L.B, Brodersen, D.E.
Deposit date:2009-01-29
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:The activity and selectivity of fission yeast Pop2p are affected by a high affinity for Zn2+ and Mn2+ in the active site
Rna, 15, 2009
6TKT
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BU of 6tkt by Molmil
Structure of the bacterial toxin phenomycin
Descriptor: Pre-phenomycin
Authors:Nielsen, J.T, Mulder, F.A.A, Toerring, T, Poulsen, T.
Deposit date:2019-11-28
Release date:2020-01-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and Function of the Bacterial Protein Toxin Phenomycin.
Structure, 28, 2020
6THH
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BU of 6thh by Molmil
Crystal structure of type I-D CRISPR-Cas nuclease Cas10d in complex with the SIRV3 AcrID1 (gp02) anti-CRISPR protein
Descriptor: CRISPR-associated protein, CscA, PHOSPHATE ION, ...
Authors:Manav, M.C, Brodersen, D.E.
Deposit date:2019-11-20
Release date:2020-10-28
Last modified:2021-06-30
Method:X-RAY DIFFRACTION (3.48 Å)
Cite:Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein.
Nat Commun, 11, 2020
4XB6
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BU of 4xb6 by Molmil
Structure of the E. coli C-P lyase core complex
Descriptor: Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, ...
Authors:Brodersen, D.E.
Deposit date:2014-12-16
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the bacterial carbon-phosphorus lyase machinery.
Nature, 525, 2015
4PC3
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BU of 4pc3 by Molmil
Elongation factor Tu:Ts complex with partially bound GDP
Descriptor: Elongation factor Ts, Elongation factor Tu 1, GLYCEROL, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8313 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
4PC7
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BU of 4pc7 by Molmil
Elongation factor Tu:Ts complex in a near GTP conformation.
Descriptor: (1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22-DIOXOOX ACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN-2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L-GALACTOPYRANOSIDE, Elongation factor Ts, Elongation factor Tu 1, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.6003 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
4PC1
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BU of 4pc1 by Molmil
Elongation Factor Tu:Ts complex with a bound phosphate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Elongation factor Ts, Elongation factor Tu, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
4PC6
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BU of 4pc6 by Molmil
Elongation factor Tu:Ts complex with bound GDPNP
Descriptor: Elongation factor Ts, Elongation factor Tu, GLYCEROL, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
4PC2
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BU of 4pc2 by Molmil
Elongation factor Tu:Ts complex with a bound GDP
Descriptor: CHLORIDE ION, Elongation factor Ts, Elongation factor Tu, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1999 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015

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