Author results

6T34
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ATOMIC MODEL FOR TURNIP MOSAIC VIRUS (TUMV)
Descriptor:Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Valle, M.V., Cuesta, R.
Deposit date:2019-10-10
Release date:2019-11-13
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Structure of Turnip mosaic virus and its viral-like particles.
Sci Rep, 9, 2019
5ODV
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STRUCTURE OF WATERMELON MOSAIC VIRUS POTYVIRUS.
Descriptor:coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Zamora, M., Mendez-Lopez, E., Agirrezabala, X., Cuesta, R., Lavin, J.L., Sanchez-Pina, M.A., Aranda, M., Valle, M.
Deposit date:2017-07-06
Release date:2017-09-27
Last modified:2017-10-11
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Potyvirus virion structure shows conserved protein fold and RNA binding site in ssRNA viruses.
Sci Adv, 3, 2017
5NP6
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70S STRUCTURE PRIOR TO BYPASSING
Descriptor:mRNA, P-site tRNA-Gly, DNA topoisomerase small subunit, ...
Authors:Agirrezabala, X., Samatova, E., Klimova, M., Zamora, M., Gil-Carton, D., Rodnina, M., Valle, M.
Deposit date:2017-04-13
Release date:2017-06-14
Last modified:2019-02-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Ribosome rearrangements at the onset of translational bypassing.
Sci Adv, 3, 2017
5FN1
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ELECTRON CRYO-MICROSCOPY OF FILAMENTOUS FLEXIBLE VIRUS PEPMV (PEPINO MOSAIC VIRUS)
Descriptor:COAT PROTEIN, 5'-R(*UP*UP*UP*UP*UP)-3'
Authors:Agirrezabala, X., Mendez-Lopez, E., Lasso, G., Sanchez-Pina, M.A., Aranda, M.A., Valle, M.
Deposit date:2015-11-10
Release date:2015-12-30
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses.
Elife, 4, 2015
3W9P
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CRYSTAL STRUCTURE OF MONOMERIC FRAC (SECOND CRYSTAL FORM)
Descriptor:Fragaceatoxin C
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2013-04-09
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
3VWI
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HIGH RESOLUTION CRYSTAL STRUCTURE OF FRAC IN THE MONOMERIC FORM
Descriptor:Fragaceatoxin C, CHLORIDE ION, AMMONIUM ION, ...
Authors:Tanaka, K., Morante, K., Caaveiro, J.M.M., Gonzalez-Manas, J.M., Tsumoto, K.
Deposit date:2012-08-23
Release date:2013-08-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
3ZWJ
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CRYSTAL STRUCTURE OF THE PORE-FORMING TOXIN FRAC FROM ACTINIA FRAGACEA (FORM 3)
Descriptor:FRAGACEATOXIN C
Authors:Mechaly, A.E., Bellomioa, A., Morantea, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2011-08-01
Release date:2012-07-04
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
3ZWG
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CRYSTAL STRUCTURE OF THE PORE-FORMING TOXIN FRAC FROM ACTINIA FRAGACEA (FORM 2)
Descriptor:FRAGACEATOXIN C
Authors:Mechaly, A.E., Bellomio, A., Morante, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2011-07-29
Release date:2012-07-04
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Pores of the Toxin Frac Assemble Into 2D Hexagonal Clusters in Both Crystal Structures and Model Membranes.
J.Struct.Biol., 180, 2012
3LIM
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CRYSTAL STRUCTURE OF THE PORE FORMING TOXIN FRAC FROM SEA ANEMONE ACTINIA FRAGACEA
Descriptor:Fragaceatoxin C, LAURYL DIMETHYLAMINE-N-OXIDE
Authors:Mechaly, A.E., Bellomio, A., Morante, K., Gonzalez-Manas, J.M., Guerin, D.M.A.
Deposit date:2010-01-25
Release date:2010-12-15
Last modified:2011-07-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins.
Structure, 19, 2011
3HO8
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CRYSTAL STRUCTURE OF S. AUREUS PYRUVATE CARBOXYLASE IN COMPLEX WITH COENZYME A
Descriptor:Pyruvate carboxylase, COENZYME A, MANGANESE (II) ION, ...
Authors:Tong, L., Yu, L.P.C.
Deposit date:2009-06-01
Release date:2009-06-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Symmetrical Tetramer for S. aureus Pyruvate Carboxylase in Complex with Coenzyme A.
Structure, 17, 2009
3HB9
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CRYSTAL STRUCTURE OF S. AUREUS PYRUVATE CARBOXYLASE A610T MUTANT
Descriptor:Pyruvate carboxylase, 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Tong, L., Yu, L.P.C.
Deposit date:2009-05-04
Release date:2009-06-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Symmetrical Tetramer for S. aureus Pyruvate Carboxylase in Complex with Coenzyme A.
Structure, 17, 2009
3HBL
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CRYSTAL STRUCTURE OF S. AUREUS PYRUVATE CARBOXYLASE T908A MUTANT
Descriptor:Pyruvate carboxylase, 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, MANGANESE (II) ION, ...
Authors:Tong, L., Yu, L.P.C.
Deposit date:2009-05-04
Release date:2009-06-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A Symmetrical Tetramer for S. aureus Pyruvate Carboxylase in Complex with Coenzyme A.
Structure, 17, 2009
3EP2
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MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
Descriptor:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
Authors:Frank, J., Li, W., Agirrezabala, X.
Deposit date:2008-09-29
Release date:2008-12-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
2Z9Q
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TRANSFER RNA IN THE HYBRID P/E STATE
Descriptor:tRNA
Authors:Frank, J., Li, W.
Deposit date:2007-09-25
Release date:2007-10-16
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Transfer RNA in the hybrid P/E state
To be Published
2RDO
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50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND
Descriptor:5S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 50S ribosomal protein L25, ...
Authors:Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J.
Deposit date:2007-09-24
Release date:2008-03-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.
J.Mol.Biol., 374, 2007
2OB7
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STRUCTURE OF TMRNA-(SMPB)2 COMPLEX AS INFERRED FROM CRYO-EM
Descriptor:transfer-messenger RNA, 16S ribosomal RNA, SsrA-binding protein
Authors:Frank, J., Felden, B., Gillet, R., Li, W.
Deposit date:2006-12-18
Release date:2007-01-23
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.
J.Biol.Chem., 282, 2007
4V4V
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STRUCTURE OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056
Descriptor:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
Authors:Mitra, K., Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
4V4W
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STRUCTURE OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143
Descriptor:16S ribosomal RNA, tRNA, 30S ribosomal subunit protein S2, ...
Authors:Mitra, K., Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
1ZN0
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COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF
Descriptor:16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
1ZN1
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COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX
Descriptor:ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ...
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
1ZC8
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COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX
Descriptor:TLD 16S ribosomal RNA, H2 16S rRNA, H2b d mRNA, ...
Authors:Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J.
Deposit date:2005-04-11
Release date:2005-04-19
Last modified:2013-12-11
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
1R2W
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1R2X
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2013-12-04
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZA
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COORDINATES OF THE A/T SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZB
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COORDINATES OF THE A-SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF 70S RIBOSOME IN THE PRE-TRANSLOCATIONAL STATE
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
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PDB entries from 2020-10-21