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1Q6B
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BU of 1q6b by Molmil
Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Ensemble of 25 Structures
Descriptor: Circadian clock protein KaiA homolog
Authors:Vakonakis, I, Sun, J, Golden, S.S, Holzenburg, A, LiWang, A.C.
Deposit date:2003-08-13
Release date:2003-08-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction
Proc.Natl.Acad.Sci.USA, 101, 2004
1Q6A
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BU of 1q6a by Molmil
Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Averaged Minimized Structure
Descriptor: Circadian clock protein KaiA homolog
Authors:Vakonakis, I, Sun, J, Holzenburg, A, Golden, S.S, LiWang, A.C.
Deposit date:2003-08-13
Release date:2003-08-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA-KaiC interaction
Proc.Natl.Acad.Sci.USA, 101, 2004
1SUY
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BU of 1suy by Molmil
NMR structure of the ThKaiA180C-CIIABD complex (average minimized structure)
Descriptor: circadian clock protein KaiA, circadian clock protein KaiC
Authors:Vakonakis, I, LiWang, A.C.
Deposit date:2004-03-26
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1T4Z
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BU of 1t4z by Molmil
Solution structure of the N-terminal domain of Synechococcus elongatus SasA (25-structures ensemble)
Descriptor: Adaptive-response sensory-kinase sasA
Authors:Vakonakis, I, Klewer, D.A, LiWang, A.C.
Deposit date:2004-04-30
Release date:2004-11-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA.
J.Mol.Biol., 342, 2004
1SV1
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BU of 1sv1 by Molmil
NMR structure of the ThKaiA180C-CIIABD complex (25-structure ensemble)
Descriptor: Circadian clock protein KaiA, Circadian clock protein KaiC
Authors:Vakonakis, I, LiWang, A.C.
Deposit date:2004-03-26
Release date:2004-08-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1T4Y
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BU of 1t4y by Molmil
Solution structure of the N-terminal domain of Synechococcus elongatus SasA (average minimized structure)
Descriptor: Adaptive-response sensory-kinase sasA
Authors:Vakonakis, I, Klewer, D.A, LiWang, A.C.
Deposit date:2004-04-30
Release date:2004-11-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA.
J.Mol.Biol., 342, 2004
2H41
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BU of 2h41 by Molmil
Solution structure of the second type III domain of human Fibronectin: minimized average structure
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-05-23
Release date:2007-04-10
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2HA1
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BU of 2ha1 by Molmil
Complex of the first and second type III domains of human Fibronectin in solution
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-06-12
Release date:2007-04-10
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2H45
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BU of 2h45 by Molmil
Solution structure of the second type III domain of human Fibronectin: ensemble of 25 structures
Descriptor: Fibronectin
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2006-05-23
Release date:2007-04-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.
Embo J., 26, 2007
2JX9
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BU of 2jx9 by Molmil
Solution structure of the Gal_lectin domain of mouse Latrophilin-1 GPCR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Latrophilin 1
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2007-11-09
Release date:2008-04-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and sugar-binding mechanism of mouse Latrophilin-1 RBL: a novel 7TM receptor-attached lectin-like domain.
To be Published
2JXA
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BU of 2jxa by Molmil
Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Latrophilin 1, alpha-L-rhamnopyranose
Authors:Vakonakis, I, Campbell, I.D.
Deposit date:2007-11-09
Release date:2008-04-29
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Solution structure and sugar-binding mechanism of mouse Latrophilin-1 RBL: a novel 7TM receptor-attached lectin-like domain.
To be Published
6S02
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BU of 6s02 by Molmil
Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain - ADP bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock protein 70, MAGNESIUM ION
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
6RZY
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BU of 6rzy by Molmil
Plasmodium falciparum PFA0660w Hsp40 co-chaperone J-domain
Descriptor: Heat shock protein 40, type II
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.379 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
6RZQ
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BU of 6rzq by Molmil
Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain - ANP-PnP bound state
Descriptor: GLYCEROL, Heat shock protein 70, MAGNESIUM ION, ...
Authors:Vakonakis, I, Day, J.
Deposit date:2019-06-13
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:ThePlasmodium falciparumHsp70-x chaperone assists the heat stress response of the malaria parasite.
Faseb J., 33, 2019
3PYI
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BU of 3pyi by Molmil
Structure of the N-terminal domain of C. elegans SAS-6
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Spindle assembly abnormal protein 6, TETRAETHYLENE GLYCOL
Authors:Vakonakis, I, Steinmetz, M.O.
Deposit date:2010-12-13
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Structural basis of the 9-fold symmetry of centrioles.
Cell(Cambridge,Mass.), 144, 2011
2LKL
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BU of 2lkl by Molmil
Structure of the core intracellular domain of PfEMP1
Descriptor: Erythrocyte membrane protein 1 (PfEMP1)
Authors:Vakonakis, I, Erat, M.C.
Deposit date:2011-10-16
Release date:2012-01-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Analysis of the Plasmodium falciparum Erythrocyte Membrane Protein 1 (PfEMP1) Intracellular Domain Reveals a Conserved Interaction Epitope.
J.Biol.Chem., 287, 2012
5J4O
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BU of 5j4o by Molmil
Structure of human erythrocytic Spectrin alpha chain repeats 16-17
Descriptor: 1,2-ETHANEDIOL, Spectrin alpha chain, erythrocytic 1, ...
Authors:Cutts, E.E, Vakonakis, I.
Deposit date:2016-04-01
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Interactions of Plasmodium falciparum KAHRP and PfEMP1 with the host cytoskeleton suggest a model for cytoadherent protrusions on the infected erythrocyte surface
To Be Published
6SY0
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BU of 6sy0 by Molmil
Structure of the Plasmodium falciparum SIP2 DNA-binding AP2 tandem repeat in complex with two SPE2 half-sites
Descriptor: DNA (5'-D(*GP*GP*TP*GP*CP*AP*CP*CP*TP*AP*GP*GP*TP*GP*CP*AP*CP*C)-3'), Transcription factor with AP2 domain(S)
Authors:Reiter, D, Kantsadi, A, Vakonakis, I.
Deposit date:2019-09-26
Release date:2020-10-07
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Structural and functional analysis of the Plasmodium falciparum SIP2 DNA binding domain
To Be Published
3EJH
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BU of 3ejh by Molmil
Crystal Structure of the Fibronectin 8-9FnI Domain Pair in Complex with a Type-I Collagen Peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen type-I a1 chain, Fibronectin, ...
Authors:Erat, M.C, Lowe, E.D, Campbell, I.D, Vakonakis, I.
Deposit date:2008-09-18
Release date:2009-02-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.
Proc.Natl.Acad.Sci.USA, 106, 2009
4YNH
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BU of 4ynh by Molmil
Structure of the C. elegans SAS-5 Implico dimerization domain
Descriptor: Spindle assembly abnormal protein 5
Authors:Rogala, K.B, Vakonakis, I, Hatzopoulos, G.N.
Deposit date:2015-03-10
Release date:2015-06-10
Last modified:2015-08-26
Method:X-RAY DIFFRACTION (1 Å)
Cite:The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.
Elife, 4, 2015
4YV4
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BU of 4yv4 by Molmil
Structure of the C. elegans SAS-5 coiled coil domain
Descriptor: PHOSPHATE ION, SULFATE ION, Spindle assembly abnormal protein 5
Authors:Rogala, K.B, Hatzopoulos, G.N, Vakonakis, I.
Deposit date:2015-03-19
Release date:2015-06-10
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.
Elife, 4, 2015
6SSZ
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BU of 6ssz by Molmil
Structure of the Plasmodium falciparum falcipain 2 protease in complex with an (E)-chalcone inhibitor.
Descriptor: (~{E})-3-(1,3-benzodioxol-5-yl)-1-(3-nitrophenyl)prop-2-en-1-one, Cysteine proteinase falcipain 2a
Authors:Machin, J, Kantsadi, A, Vakonakis, I.
Deposit date:2019-09-09
Release date:2019-12-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:The complex of Plasmodium falciparum falcipain-2 protease with an (E)-chalcone-based inhibitor highlights a novel, small, molecule-binding site.
Malar.J., 18, 2019
3G9W
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BU of 3g9w by Molmil
Crystal Structure of Talin2 F2-F3 in Complex with the Integrin Beta1D Cytoplasmic Tail
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Integrin beta-1D, ...
Authors:Anthis, N.J, Wegener, K.L, Ye, F, Kim, C, Lowe, E.D, Vakonakis, I, Bate, N, Critchley, D.R, Ginsberg, M.H, Campbell, I.D.
Deposit date:2009-02-15
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.165 Å)
Cite:The structure of an integrin/talin complex reveals the basis of inside-out signal transduction
Embo J., 28, 2009
3GXE
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BU of 3gxe by Molmil
Complex of a Low Affinity Collagen Site with the Fibronectin 8-9FnI Domain Pair
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(I) chain, Fibronectin, ...
Authors:Sladek, B, Campbell, I.D, Vakonakis, I.
Deposit date:2009-04-02
Release date:2010-04-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode
J.Biol.Chem., 288, 2013
3Q0X
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BU of 3q0x by Molmil
N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homolog Bld12p
Descriptor: Centriole protein
Authors:Kitagawa, D, Vakonakis, I, Olieric, N, Hilbert, M, Keller, D, Olieric, V, Bortfeld, M, Erat, M.C, Flueckiger, I, Goenczy, P, Steinmetz, M.O.
Deposit date:2010-12-16
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Structural basis of the 9-fold symmetry of centrioles.
Cell(Cambridge,Mass.), 144, 2011

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