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5EVY
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BU of 5evy by Molmil
Salicylate hydroxylase substrate complex
Descriptor: 2-HYDROXYBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Salicylate hydroxylase
Authors:Morimoto, Y, Uemura, T.
Deposit date:2015-11-20
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:The catalytic mechanism of decarboxylative hydroxylation of salicylate hydroxylase revealed by crystal structure analysis at 2.5 angstrom resolution
Biochem.Biophys.Res.Commun., 469, 2016
4Y61
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BU of 4y61 by Molmil
Crystal structure of the complex between Slitrk2 LRR1 and PTP delta Ig1-Fn1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-type tyrosine-protein phosphatase delta, SLIT and NTRK-like protein 2
Authors:Yamgata, A, Sato, Y, Goto-Ito, S, Uemura, T, Maeda, A, Shiroshima, T, Yoshida, T, Fukai, S.
Deposit date:2015-02-12
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.358 Å)
Cite:Structure of Slitrk2-PTP delta complex reveals mechanisms for splicing-dependent trans-synaptic adhesion.
Sci Rep, 5, 2015
7FCI
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BU of 7fci by Molmil
human NTCP in complex with YN69083 Fab
Descriptor: Fab Heavy chain, Fab Light chain, Sodium/bile acid cotransporter
Authors:Park, J.H, Iwamoto, M, Yun, J.H, Uchikubo-Kamo, T, Son, D, Jin, Z, Yoshida, H, Ohki, M, Ishimoto, N, Mizutani, K, Oshima, M, Muramatsu, M, Wakita, T, Shirouzu, M, Liu, K, Uemura, T, Nomura, N, Iwata, S, Watashi, K, Tame, J.R.H, Nishizawa, T, Lee, W, Park, S.Y.
Deposit date:2021-07-14
Release date:2022-05-25
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the HBV receptor and bile acid transporter NTCP.
Nature, 606, 2022
6JOD
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BU of 6jod by Molmil
Angiotensin II type 2 receptor with ligand
Descriptor: Angiotensin II, Heavy chain of 4A03Fab, Light chain of 4A03Fab, ...
Authors:Asada, H, Iwata, S, Hirata, K, Shimamura, T.
Deposit date:2019-03-20
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The Crystal Structure of Angiotensin II Type 2 Receptor with Endogenous Peptide Hormone.
Structure, 28, 2020
6LBH
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BU of 6lbh by Molmil
Cryo-EM structure of the MgtE Mg2+ channel under Mg2+-free conditions
Descriptor: Fab heavy chain, Fab light chain, Magnesium transporter MgtE
Authors:Hattori, M, Jin, F.
Deposit date:2019-11-14
Release date:2021-04-14
Last modified:2021-05-19
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The structure of MgtE in the absence of magnesium provides new insights into channel gating.
Plos Biol., 19, 2021
4ZY3
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BU of 4zy3 by Molmil
Crystal Structure of Keap1 in Complex with a small chemical compound, K67
Descriptor: FORMIC ACID, Kelch-like ECH-associated protein 1, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide)
Authors:Fukutomi, T, Iso, T, Suzuki, T, Takagi, K, Mizushima, T, Komatsu, M, Yamamoto, M.
Deposit date:2015-05-21
Release date:2016-05-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
6KS2
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BU of 6ks2 by Molmil
Structure of anti-Ghrelin receptor antibody
Descriptor: Fab7881 Heavy Chain (FabH), Fab7881 Light Chain (FabL)
Authors:Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M.
Deposit date:2019-08-23
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.
Nat Commun, 11, 2020
6KO5
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BU of 6ko5 by Molmil
Complex structure of Ghrelin receptor with Fab
Descriptor: 6-(4-bromanyl-2-fluoranyl-phenoxy)-2-methyl-3-[[(3~{S})-1-propan-2-ylpiperidin-3-yl]methyl]pyrido[3,2-d]pyrimidin-4-one, Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1, Fab7881 Heavy Chain, ...
Authors:Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M.
Deposit date:2019-08-08
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.
Nat Commun, 11, 2020
4YH7
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BU of 4yh7 by Molmil
Crystal structure of PTPdelta ectodomain in complex with IL1RAPL1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein-like 1, ...
Authors:Yamagata, A, Fukai, S.
Deposit date:2015-02-27
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YFE
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BU of 4yfe by Molmil
Crystal structure of PTP delta Fn1-Fn2
Descriptor: Receptor-type tyrosine-protein phosphatase delta
Authors:Yamagata, A, Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.972 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YFG
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BU of 4yfg by Molmil
Crystal structure of PTP delta meA3/meB minus variant Ig1-Fn1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-type tyrosine-protein phosphatase delta
Authors:Yamagata, A, Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.491 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YH6
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BU of 4yh6 by Molmil
Crystal structure of IL1RAPL1 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein-like 1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yamagata, A, Fukai, S.
Deposit date:2015-02-27
Release date:2015-05-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
4YFD
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BU of 4yfd by Molmil
Crystal structure PTP delta Ig1-Fn2 in complex with IL-1RAcP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein, Receptor-type tyrosine-protein phosphatase delta
Authors:Yamagata, A, Fukai, S.
Deposit date:2015-02-25
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.253 Å)
Cite:Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
8HRX
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BU of 8hrx by Molmil
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Descriptor: Fab heavy chain from antibody IgG clone number YN9048, Fab light chain from antibody IgG clone number YN9048, PreS1 protein (Fragment), ...
Authors:Asami, J, Shimizu, T, Ohto, U.
Deposit date:2022-12-16
Release date:2024-01-17
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structural basis of hepatitis B virus receptor binding.
Nat.Struct.Mol.Biol., 2024
8HRY
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BU of 8hry by Molmil
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Descriptor: Fab heavy chain from antibody IgG clone number YN9016, Fab light chain from antibody IgG clone number YN9016, Large S protein (Fragment), ...
Authors:Asami, J, Shimizu, T, Ohto, U.
Deposit date:2022-12-16
Release date:2024-01-17
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Structural basis of hepatitis B virus receptor binding.
Nat.Struct.Mol.Biol., 2024
7CEE
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BU of 7cee by Molmil
Crystal structure of mouse neuroligin-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neuroligin-3
Authors:Yamagata, A, Yoshida, T, Shiroshima, T, Maeda, A, Fukai, S.
Deposit date:2020-06-23
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.763 Å)
Cite:Canonical versus non-canonical transsynaptic signaling of neuroligin 3 tunes development of sociality in mice.
Nat Commun, 12, 2021
7CEG
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BU of 7ceg by Molmil
Crystal structure of the complex between mouse PTP delta and neuroligin-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform C of Receptor-type tyrosine-protein phosphatase delta, Neuroligin-3
Authors:Yamagata, A, Yoshida, T, Shiroshima, T, Maeda, A, Fukai, S.
Deposit date:2020-06-23
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:Canonical versus non-canonical transsynaptic signaling of neuroligin 3 tunes development of sociality in mice.
Nat Commun, 12, 2021
7DFP
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BU of 7dfp by Molmil
Human dopamine D2 receptor in complex with spiperone
Descriptor: 8-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-1-phenyl-1,3,8-triazaspiro[4.5]decan-4-one, D(2) dopamine receptor,Soluble cytochrome b562, FabH, ...
Authors:Im, D, Shimamura, T, Iwata, S.
Deposit date:2020-11-09
Release date:2020-12-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the dopamine D 2 receptor in complex with the antipsychotic drug spiperone.
Nat Commun, 11, 2020
5Z8X
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BU of 5z8x by Molmil
Crystal structure of human LRRTM2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat transmembrane neuronal protein 2
Authors:Yamagata, A, Fukai, S.
Deposit date:2018-02-01
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5Z8Y
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BU of 5z8y by Molmil
Crystal structure of human LRRTM2 in complex with Neurexin 1beta
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yamagata, A, Fukai, S.
Deposit date:2018-02-01
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5XJM
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BU of 5xjm by Molmil
Complex structure of angiotensin II type 2 receptor with Fab
Descriptor: FabH, FabL, Sar1, ...
Authors:Asada, H, Horita, S, Shimamura, T, Iwata, S.
Deposit date:2017-05-02
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the human angiotensin II type 2 receptor bound to an angiotensin II analog
Nat. Struct. Mol. Biol., 25, 2018
7W3N
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BU of 7w3n by Molmil
Crystal structure of Ufm1 fused to UFBP1 UFIM
Descriptor: UFBP1 peptide,Ubiquitin-fold modifier 1
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7W3O
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BU of 7w3o by Molmil
Crystal structure of human CYB5R3
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
5XLI
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BU of 5xli by Molmil
Structure of anti-Angiotensin II type2 receptor antibody (D5711-4A03)
Descriptor: FabH, FabL
Authors:Asada, H, Horita, S, Iwata, S, Hirata, K.
Deposit date:2017-05-10
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Crystal structure of the human angiotensin II type 2 receptor bound to an angiotensin II analog.
Nat. Struct. Mol. Biol., 25, 2018
7VGS
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BU of 7vgs by Molmil
SARS-CoV-2 M protein dimer (short form) in complex with YN7717_9 Fab
Descriptor: Membrane protein, YN7717_9 Fab heavy chain, YN7717_9 Fab light chain
Authors:Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2021-09-18
Release date:2022-08-03
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of SARS-CoV-2 membrane protein essential for virus assembly.
Nat Commun, 13, 2022

 

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