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2ZJS
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BU of 2zjs by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment
Descriptor: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ...
Authors:Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O.
Deposit date:2008-03-08
Release date:2008-10-14
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
2ZQP
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BU of 2zqp by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus
Descriptor: Preprotein translocase SecE subunit, Preprotein translocase SecY subunit
Authors:Tsukazaki, T, Nureki, O.
Deposit date:2008-08-14
Release date:2008-10-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (6 Å)
Cite:Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
3AQP
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BU of 3aqp by Molmil
Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
Descriptor: Probable SecDF protein-export membrane protein
Authors:Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O.
Deposit date:2010-11-16
Release date:2011-05-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
2RRN
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BU of 2rrn by Molmil
Solution structure of SecDF periplasmic domain P4
Descriptor: Probable SecDF protein-export membrane protein
Authors:Tanaka, T, Tsukazaki, T, Echizen, Y, Nureki, O, Kohno, T.
Deposit date:2011-01-30
Release date:2011-05-18
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
7WAX
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BU of 7wax by Molmil
MurJ inward occluded form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (4S)-2-METHYL-2,4-PENTANEDIOL, lipid II flippase MurJ
Authors:Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
Deposit date:2021-12-15
Release date:2022-06-01
Last modified:2022-08-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
7WAW
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BU of 7waw by Molmil
MurJ inward closed form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, lipid II flippase MurJ
Authors:Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
Deposit date:2021-12-15
Release date:2022-06-01
Last modified:2022-08-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
7WAG
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BU of 7wag by Molmil
Crystal structure of MurJ squeezed form
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Lipid II flippase MurJ
Authors:Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
Deposit date:2021-12-14
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
3AQO
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BU of 3aqo by Molmil
Structure and function of a membrane component SecDF that enhances protein export
Descriptor: Probable SecDF protein-export membrane protein
Authors:Echizen, Y, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2010-11-16
Release date:2011-05-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of a membrane component SecDF that enhances protein export.
Nature, 474, 2011
5XAP
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BU of 5xap by Molmil
Crystal structure of SecDF in I form (C2 space group)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAM
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BU of 5xam by Molmil
Crystal structure of SecDF in I form at 4 A resolution
Descriptor: Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAN
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BU of 5xan by Molmil
Crystal structure of SecDF in I form (P212121 space group)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, POLYETHYLENE GLYCOL (N=34), Protein translocase subunit SecD
Authors:Tsukazaki, T, Tanaka, Y, Furukwa, A.
Deposit date:2017-03-14
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
8J4C
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BU of 8j4c by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
Authors:Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
Deposit date:2023-04-19
Release date:2024-03-27
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
8K1R
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BU of 8k1r by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)
Authors:Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
Deposit date:2023-07-11
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
5AWW
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BU of 5aww by Molmil
Precise Resting State of Thermus thermophilus SecYEG
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.724 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
5CH4
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BU of 5ch4 by Molmil
Peptide-Bound State of Thermus thermophilus SecYEG
Descriptor: Protein translocase subunit SecE, Protein translocase subunit SecY, Putative preprotein translocase, ...
Authors:Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
6LEO
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BU of 6leo by Molmil
Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Takeuchi, A, Uchino, S, Sugano, Y.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
6LEP
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BU of 6lep by Molmil
Crystal structure of thiosulfate transporter YeeE inactive mutant - C91A
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
Authors:Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Sugano, Y, Takeuchi, A, Uchino, S.
Deposit date:2019-11-26
Release date:2020-09-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
2IPC
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BU of 2ipc by Molmil
Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer
Descriptor: Preprotein translocase SecA subunit
Authors:Vassylyev, D.G, Mori, H, Vassylyeva, M.N, Tsukazaki, T, Kimura, Y, Tahirov, T.H, Ito, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-12
Release date:2006-11-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Translocation ATPase SecA from Thermus thermophilus Reveals a Parallel, Head-to-Head Dimer.
J.Mol.Biol., 364, 2006
7DQK
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BU of 7dqk by Molmil
A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Tanaka, Y, Tsukazaki, T, Sasaki, A, Iwaki, S.
Deposit date:2020-12-24
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport.
Febs Lett., 595, 2021
5XI8
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BU of 5xi8 by Molmil
Structure and function of the TPR domain
Descriptor: Beta-barrel assembly-enhancing protease
Authors:Tanaka, Y, Tsukazaki, T.
Deposit date:2017-04-26
Release date:2017-10-18
Last modified:2017-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The TPR domain of BepA is required for productive interaction with substrate proteins and the beta-barrel assembly machinery complex.
Mol. Microbiol., 106, 2017
6AL2
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BU of 6al2 by Molmil
Crystal structure of E. coli YidC at 2.8 A resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Membrane protein insertase YidC
Authors:Tanaka, Y, Tsukazaki, T, Izumioka, A, Hamid, A.A, Fujii, A.
Deposit date:2018-09-05
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8-angstrom crystal structure of Escherichia coli YidC revealing all core regions, including flexible C2 loop.
Biochem. Biophys. Res. Commun., 505, 2018
3WVF
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BU of 3wvf by Molmil
Crystal structure of YidC from Escherichia coli
Descriptor: Membrane protein insertase YidC
Authors:Kumazaki, K, Tsukazaki, T, Kishimoto, T, Ishitani, R, Nureki, O.
Deposit date:2014-05-20
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
Sci Rep, 4, 2014
3WO7
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BU of 3wo7 by Molmil
Crystal structure of YidC from Bacillus halodurans (form II)
Descriptor: COPPER (II) ION, Membrane protein insertase YidC 2
Authors:Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2013-12-20
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
3WO6
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BU of 3wo6 by Molmil
Crystal structure of YidC from Bacillus halodurans (form I)
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2
Authors:Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
Deposit date:2013-12-20
Release date:2014-04-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
5XJJ
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BU of 5xjj by Molmil
Crystal structure of a MATE family protein
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, multi drug efflux transporter
Authors:Tanaka, Y, Tsukazaki, T, Iwaki, S.
Deposit date:2017-05-02
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein
Structure, 25, 2017

 

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