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3EOJ
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FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K AT 1.3A RESOLUTION
Descriptor:Bacteriochlorophyll a protein, BACTERIOCHLOROPHYLL A, 1,2-ETHANEDIOL, ...
Authors:Tronrud, D.E., Wen, J., Gay, L., Blankenship, R.E.
Deposit date:2008-09-27
Release date:2009-05-12
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.
Photosynth.Res., 100, 2009
1TLP
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CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN
Descriptor:THERMOLYSIN, N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN, CALCIUM ION, ...
Authors:Tronrud, D.E., Monzingo, A.F., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic structural analysis of phosphoramidates as inhibitors and transition-state analogs of thermolysin.
Eur.J.Biochem., 157, 1986
2TMN
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CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Tronrud, D.E., Monzingo, A.F., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic structural analysis of phosphoramidates as inhibitors and transition-state analogs of thermolysin.
Eur.J.Biochem., 157, 1986
4BCL
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FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K AT ROOM TEMPERATURE
Descriptor:BACTERIOCHLOROPHYLL A PROTEIN, BACTERIOCHLOROPHYLL A
Authors:Tronrud, D.E., Matthews, B.W.
Deposit date:1998-04-17
Release date:1998-09-16
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Refinement of the Structure of a Water-Soluble Antenna Complex from Green Photosynthetic Bacteria by Incorporation of the Chemically Determined Amino Acid Sequence
Photosynthetic Reaction Center, 1, 1993
6TMN
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STRUCTURES OF TWO THERMOLYSIN-INHIBITOR COMPLEXES THAT DIFFER BY A SINGLE HYDROGEN BOND
Descriptor:THERMOLYSIN, N-[(2R,4S)-4-hydroxy-2-(2-methylpropyl)-4-oxido-7-oxo-9-phenyl-3,8-dioxa-6-aza-4-phosphanonan-1-oyl]-L-leucine, CALCIUM ION, ...
Authors:Tronrud, D.E., Holden, H.M., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond.
Science, 235, 1987
3VDI
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STRUCTURE OF THE FMO PROTEIN FROM PELODICTYON PHAEUM
Descriptor:bacteriochlorophyll A protein, BACTERIOCHLOROPHYLL A, TETRAETHYLENE GLYCOL
Authors:Tronrud, D.E., Larson, C.R., Seng, C.O., Lauman, L., Matthies, H.J., Wen, J., Blankenship, R.E., Allen, J.P.
Deposit date:2012-01-05
Release date:2012-01-25
Last modified:2012-05-09
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Reinterpretation of the electron density at the site of the eighth bacteriochlorophyll in the FMO protein from Pelodictyon phaeum.
Photosynth.Res., 112, 2012
3QGA
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3.0 A MODEL OF IRON CONTAINING UREASE UREA2B2 FROM HELICOBACTER MUSTELAE
Descriptor:Fusion of urease beta and gamma subunits, Urease subunit beta 2, FE (III) ION
Authors:Tronrud, D.E., Robbins, A., Karplus, P.A.
Deposit date:2011-01-24
Release date:2011-08-10
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Iron-containing urease in a pathogenic bacterium.
Proc.Natl.Acad.Sci.USA, 108, 2011
3QGK
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3.0 A MODEL OF IRON CONTAINING UREASE UREA2B2 FROM HELICOBACTER MUSTELAE (REFINED W/ NO ORDERED SOLVENT)
Descriptor:Fusion of urease beta and gamma subunits, Urease subunit beta 2, FE (III) ION
Authors:Tronrud, D.E., Robbins, A., Karplus, P.A.
Deposit date:2011-01-24
Release date:2011-08-10
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Iron-containing urease in a pathogenic bacterium.
Proc.Natl.Acad.Sci.USA, 108, 2011
4TMN
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SLOW-AND FAST-BINDING INHIBITORS OF THERMOLYSIN DISPLAY DIFFERENT MODES OF BINDING. CRYSTALLOGRAPHIC ANALYSIS OF EXTENDED PHOSPHONAMIDATE TRANSITION-STATE ANALOGUES
Descriptor:THERMOLYSIN, N-[(S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}-2-phenylethyl](hydroxy)phosphoryl]-L-leucyl-L-alanine, CALCIUM ION, ...
Authors:Holden, H.M., Tronrud, D.E., Monzingo, A.F., Weaver, L.H., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Slow- and fast-binding inhibitors of thermolysin display different modes of binding: crystallographic analysis of extended phosphonamidate transition-state analogues.
Biochemistry, 26, 1987
5TMN
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SLOW-AND FAST-BINDING INHIBITORS OF THERMOLYSIN DISPLAY DIFFERENT MODES OF BINDING. CRYSTALLOGRAPHIC ANALYSIS OF EXTENDED PHOSPHONAMIDATE TRANSITION-STATE ANALOGUES
Descriptor:THERMOLYSIN, N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucyl-L-leucine, CALCIUM ION, ...
Authors:Holden, H.M., Tronrud, D.E., Monzingo, A.F., Weaver, L.H., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Slow- and fast-binding inhibitors of thermolysin display different modes of binding: crystallographic analysis of extended phosphonamidate transition-state analogues.
Biochemistry, 26, 1987
1DP0
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E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION, SODIUM ION, ...
Authors:Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
Deposit date:1999-12-22
Release date:2001-02-21
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.
Protein Sci., 9, 2000
4V41
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E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC)
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
Deposit date:2000-06-07
Release date:2014-07-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.
Protein Sci., 9, 2000
1F4A
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E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC)
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
Deposit date:2000-06-07
Release date:2001-02-21
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.
Protein Sci., 9, 2000
1F4H
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E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC)
Descriptor:BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.
Deposit date:2000-06-07
Release date:2001-02-21
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High resolution refinement of beta-galactosidase in a new crystal form reveals multiple metal-binding sites and provides a structural basis for alpha-complementation.
Protein Sci., 9, 2000
5CRO
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REFINED STRUCTURE OF CRO REPRESSOR PROTEIN FROM BACTERIOPHAGE LAMBDA
Descriptor:CRO REPRESSOR PROTEIN, PHOSPHATE ION
Authors:Ohlendorf, D.H., Tronrud, D.E., Matthews, B.W.
Deposit date:1998-04-17
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Refined structure of Cro repressor protein from bacteriophage lambda suggests both flexibility and plasticity.
J.Mol.Biol., 280, 1998
7TLN
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STRUCTURAL ANALYSIS OF THE INHIBITION OF THERMOLYSIN BY AN ACTIVE-SITE-DIRECTED IRREVERSIBLE INHIBITOR
Descriptor:THERMOLYSIN, CALCIUM ION, ZINC ION, ...
Authors:Matthews, B.W., Holmes, M.A., Tronrud, D.E.
Deposit date:1983-01-27
Release date:1983-03-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural analysis of the inhibition of thermolysin by an active-site-directed irreversible inhibitor.
Biochemistry, 22, 1983
3ENI
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CRYSTAL STRUCTURE OF THE FENNA-MATTHEWS-OLSON PROTEIN FROM CHLOROBACULUM TEPIDUM
Descriptor:Bacteriochlorophyll a protein, BACTERIOCHLOROPHYLL A
Authors:Tronrud, D., Camara-Artigas, A., Blankenship, R., Allen, J.P.
Deposit date:2008-09-25
Release date:2009-05-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.
Photosynth.Res., 100, 2009
3LO8
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CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF FERREDOXIN:NADP+ REDUCTASE FROM MAIZE ROOT AT 1.05 ANGSTROMS
Descriptor:Ferredoxin--NADP reductase, FLAVIN-ADENINE DINUCLEOTIDE, SODIUM ION
Authors:Faber, H.R., Karplus, P.A.
Deposit date:2010-02-03
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.
Acta Crystallogr.,Sect.D, 66, 2010
1L56
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ANALYSIS OF THE INTERACTION BETWEEN CHARGED SIDE CHAINS AND THE ALPHA-HELIX DIPOLE USING DESIGNED THERMOSTABLE MUTANTS OF PHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME, BETA-MERCAPTOETHANOL
Authors:Nicholson, H., Matthews, B.W.
Deposit date:1991-05-06
Release date:1991-10-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Analysis of the effectiveness of proline substitutions and glycine replacements in increasing the stability of phage T4 lysozyme.
Biopolymers, 32, 1992
1L60
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ANALYSIS OF THE INTERACTION BETWEEN CHARGED SIDE CHAINS AND THE ALPHA-HELIX DIPOLE USING DESIGNED THERMOSTABLE MUTANTS OF PHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME
Authors:Nicholson, H., Matthews, B.W.
Deposit date:1991-05-06
Release date:1991-10-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Analysis of the effectiveness of proline substitutions and glycine replacements in increasing the stability of phage T4 lysozyme.
Biopolymers, 32, 1992
1TMN
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BINDING OF N-CARBOXYMETHYL DIPEPTIDE INHIBITORS TO THERMOLYSIN DETERMINED BY X-RAY CRYSTALLOGRAPHY. A NOVEL CLASS OF TRANSITION-STATE ANALOGUES FOR ZINC PEPTIDASES
Descriptor:THERMOLYSIN, N-[(1R)-1-carboxy-3-phenylpropyl]-L-leucyl-L-tryptophan, CALCIUM ION, ...
Authors:Monzingo, A.F., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Binding of N-carboxymethyl dipeptide inhibitors to thermolysin determined by X-ray crystallography: a novel class of transition-state analogues for zinc peptidases
Biochemistry, 23, 1984
3TMN
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THE BINDING OF L-VALYL-L-TRYPTOPHAN TO CRYSTALLINE THERMOLYSIN ILLUSTRATES THE MODE OF INTERACTION OF A PRODUCT OF PEPTIDE HYDROLYSIS
Descriptor:THERMOLYSIN, VALINE, TRYPTOPHAN, ...
Authors:Holden, H.M., Matthews, B.W.
Deposit date:1987-06-29
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The binding of L-valyl-L-tryptophan to crystalline thermolysin illustrates the mode of interaction of a product of peptide hydrolysis.
J.Biol.Chem., 263, 1988
8TLN
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STRUCTURAL COMPARISON SUGGESTS THAT THERMOLYSIN AND RELATED NEUTRAL PROTEASES UNDERGO HINGE-BENDING MOTION DURING CATALYSIS
Descriptor:THERMOLYSIN, VALINE, LYSINE, ...
Authors:Tronrud, D., Matthews, B.W.
Deposit date:1993-09-01
Release date:1994-04-30
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis.
Biochemistry, 31, 1992
1L21
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CONTRIBUTIONS OF LEFT-HANDED HELICAL RESIDUES TO THE STRUCTURE AND STABILITY OF BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME
Authors:Nicholson, H., Matthews, B.W.
Deposit date:1989-05-01
Release date:1990-01-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Contributions of left-handed helical residues to the structure and stability of bacteriophage T4 lysozyme.
J.Mol.Biol., 210, 1989
1L22
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CONTRIBUTIONS OF LEFT-HANDED HELICAL RESIDUES TO THE STRUCTURE AND STABILITY OF BACTERIOPHAGE T4 LYSOZYME
Descriptor:T4 LYSOZYME
Authors:Nicholson, H., Matthews, B.W.
Deposit date:1989-05-01
Release date:1990-01-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Contributions of left-handed helical residues to the structure and stability of bacteriophage T4 lysozyme.
J.Mol.Biol., 210, 1989