Author results

1B8Q
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SOLUTION STRUCTURE OF THE EXTENDED NEURONAL NITRIC OXIDE SYNTHASE PDZ DOMAIN COMPLEXED WITH AN ASSOCIATED PEPTIDE
Descriptor:PROTEIN (NEURONAL NITRIC OXIDE SYNTHASE), PROTEIN (HEPTAPEPTIDE)
Authors:Tochio, H., Zhang, Q., Mandal, P., Li, M., Zhang, M.
Deposit date:1999-02-01
Release date:1999-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the extended neuronal nitric oxide synthase PDZ domain complexed with an associated peptide.
Nat.Struct.Biol., 6, 1999
1H8M
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SOLUTION STRUCTURE OF YKT6
Descriptor:SYNAPTOBREVIN HOMOLOG 1
Authors:Tochio, H., Tsui, M.M.K., Banfield, D.K., Zhang, M.
Deposit date:2001-02-10
Release date:2001-08-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An Autoinhibitory Mechanism for Nonsyntaxin Snare Proteins Revealed by the Structure of Ykt6P
Science, 293, 2001
1IOU
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SOLUTION STRUCTURE OF YKT6P (1-140)
Descriptor:YKT6P
Authors:Tochio, H., Tsui, M.M.K., Banfield, D.K., Zhang, M.
Deposit date:2001-04-09
Release date:2003-05-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p
SCIENCE, 293, 2001
1QLC
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SOLUTION STRUCTURE OF THE SECOND PDZ DOMAIN OF POSTSYNAPTIC DENSITY-95
Descriptor:POSTSYNAPTIC DENSITY PROTEIN 95
Authors:Tochio, H., Hung, F., Li, M., Zhang, M.
Deposit date:1999-08-25
Release date:2000-02-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure and Backbone Dynamics of the Second Pdz Domain of Postsynaptic Density-95
J.Mol.Biol., 295, 2000
1UEL
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SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Descriptor:UV excision repair protein RAD23 homolog B, 26S proteasome non-ATPase regulatory subunit 4
Authors:Fujiwara, K., Tenno, T., Jee, J.G., Sugasawa, K., Ohki, I., Kojima, C., Tochio, H., Hiroaki, H., Hanaoka, H., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
1WR0
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STRUCTURAL CHARACTERIZATION OF THE MIT DOMAIN FROM HUMAN VPS4B
Descriptor:SKD1 protein
Authors:Takasu, H., Jee, J.G., Ohno, A., Goda, N., Fujiwara, K., Tochio, H., Shirakawa, M., Hiroaki, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-07
Release date:2005-08-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
1WR1
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THE COMPLEX STURCTURE OF DSK2P UBA WITH UBIQUITIN
Descriptor:Ubiquitin, Ubiquitin-like protein DSK2
Authors:Ohno, A., Jee, J.G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Hiroaki, H., kobayashi, H., Shirakawa, M.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1WYW
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CRYSTAL STRUCTURE OF SUMO1-CONJUGATED THYMINE DNA GLYCOSYLASE
Descriptor:G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3C, CHLORIDE ION, ...
Authors:Baba, D., Maita, N., Jee, J.G., Uchimura, Y., Saitoh, H., Sugasawa, K., Hanaoka, F., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-02-17
Release date:2005-06-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of thymine DNA glycosylase conjugated to SUMO-1.
Nature, 435, 2005
2D07
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CRYSTAL STRUCTURE OF SUMO-3-MODIFIED THYMINE-DNA GLYCOSYLASE
Descriptor:G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3B
Authors:Baba, D., Maita, N., Jee, J.G., Uchimura, Y., Saitoh, H., Sugasawa, K., Hanaoka, F., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-07-26
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
J.Mol.Biol., 359, 2006
2D2P
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THE SOLUTION STRUCTURE OF MICELLE-BOUND PEPTIDE
Descriptor:Pituitary adenylate cyclase activating polypeptide-38
Authors:Tateishi, Y., Jee, J.G., Inooka, H., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-09-14
Release date:2006-09-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of micelle-bound peptide
To be Published
2EXD
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THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF A NFED HOMOLOG FROM PYROCOCCUS HORIKOSHII
Descriptor:nfeD short homolog
Authors:Kuwahara, Y., Ohno, A., Morii, T., Tochio, H., Shirakawa, M., Hiroaki, H.
Deposit date:2005-11-08
Release date:2006-12-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.
Protein Sci., 17, 2008
2Z5V
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SOLUTION STRUCTURE OF THE TIR DOMAIN OF HUMAN MYD88
Descriptor:Myeloid differentiation primary response protein MyD88
Authors:Ohnishi, H., Tochio, H., Hiroaki, H., Kondo, N., Kato, Z., Shirakawa, M.
Deposit date:2007-07-19
Release date:2008-08-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling.
Proc.Natl.Acad.Sci.USA, 2009
2MX2
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UBX-L DOMAIN OF VCIP135
Descriptor:Deubiquitinating protein VCIP135
Authors:Iwazu, T., Murayama, S., Igarashi, R., Hrioaki, H., Shirakawa, M., Tochio, H.
Deposit date:2014-12-07
Release date:2016-07-13
Method:SOLUTION NMR
Cite:Structure and interaction mode of the UBX-L domain of VCIP135 determined by solution NMR spectroscopy
To be Published
2RPA
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THE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF MICROTUBULE SEVERING ENZYME
Descriptor:Katanin p60 ATPase-containing subunit A1
Authors:Iwaya, N., Kuwahara, Y., Unzai, S., Nagata, T., Tomii, K., Goda, N., Tochio, H., Shirakawa, M., Hiroaki, H.
Deposit date:2008-05-13
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization
J.Biol.Chem., 285, 2010
2RPQ
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SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3
Descriptor:Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1
Authors:Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RQQ
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STRUCTURE OF C-TERMINAL REGION OF CDT1
Descriptor:DNA replication factor Cdt1
Authors:Jee, J.G., Mizuno, T., Kamada, K., Tochio, H., Hiroaki, H., Hanaoka, F., Shirakawa, M.
Deposit date:2009-10-14
Release date:2010-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and mutagenesis studies of the C-terminal region of licensing factor Cdt1 enable the identification of key residues for binding to replicative helicase Mcm proteins
J.Biol.Chem., 285, 2010
3A4R
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THE CRYSTAL STRUCTURE OF SUMO-LIKE DOMAIN 2 IN NIP45
Descriptor:NFATC2-interacting protein, 1,2-ETHANEDIOL, SULFATE ION
Authors:Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2009-07-14
Release date:2010-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45
Proteins, 78, 2009
3A4S
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THE CRYSTAL STRUCTURE OF THE SLD2:UBC9 COMPLEX
Descriptor:SUMO-conjugating enzyme UBC9, NFATC2-interacting protein
Authors:Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2009-07-14
Release date:2010-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for regulation of poly-SUMO chain by a SUMO-like domain of Nip45
Proteins, 78, 2009
3WO2
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CRYSTAL STRUCTURE OF HUMAN INTERLEUKIN-18
Descriptor:Interleukin-18, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, SULFATE ION
Authors:Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
Deposit date:2013-12-19
Release date:2014-12-17
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The structural basis for receptor recognition of human interleukin-18
Nat Commun, 5, 2014
3WO3
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CRYSTAL STRUCTURE OF IL-18 IN COMPLEX WITH IL-18 RECEPTOR ALPHA
Descriptor:Interleukin-18, Interleukin-18 receptor 1, SULFATE ION, ...
Authors:Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
Deposit date:2013-12-19
Release date:2014-12-17
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structural basis for receptor recognition of human interleukin-18
Nat Commun, 5, 2014
3WO4
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CRYSTAL STRUCTURE OF THE IL-18 SIGNALING TERNARY COMPLEX
Descriptor:Interleukin-18, Interleukin-18 receptor 1, Interleukin-18 receptor accessory protein, ...
Authors:Tsutsumi, N., Kimura, T., Arita, K., Ariyoshi, M., Ohnishi, H., Kondo, N., Shirakawa, M., Kato, Z., Tochio, H.
Deposit date:2013-12-19
Release date:2014-12-17
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structural basis for receptor recognition of human interleukin-18
Nat Commun, 5, 2014
5Y3T
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CRYSTAL STRUCTURE OF HETERO-TRIMERIC CORE OF LUBAC: HOIP DOUBLE-UBA COMPLEXED WITH HOIL-1L UBL AND SHARPIN UBL
Descriptor:RanBP-type and C3HC4-type zinc finger-containing protein 1, E3 ubiquitin-protein ligase RNF31, Sharpin, ...
Authors:Tokunaga, A., Fujita, H., Ariyoshi, M., Ohki, I., Tochio, H., Iwai, K., Shirakawa, M.
Deposit date:2017-07-31
Release date:2018-05-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cooperative Domain Formation by Homologous Motifs in HOIL-1L and SHARPIN Plays A Crucial Role in LUBAC Stabilization
Cell Rep, 23, 2018
1F3C
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REFINED SOLUTION STRUCTURE OF 8KDA DYNEIN LIGHT CHAIN (DLC8)
Descriptor:DYNEIN
Authors:Fan, J.-S., Zhang, Q., Tochio, H., Zhang, M.
Deposit date:2000-06-02
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain.
J.Mol.Biol., 306, 2001
1F95
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SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 8 (DLC8) AND BIM PEPTIDE COMPLEX
Descriptor:DYNEIN, BCL2-LIKE 11 (APOPTOSIS FACILITATOR)
Authors:Fan, J.-S., Zhang, Q., Tochio, H., Li, M., Zhang, M.
Deposit date:2000-07-07
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain.
J.Mol.Biol., 306, 2001
1F96
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SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 8 (DLC8) AND NNOS PEPTIDE COMPLEX
Descriptor:DYNEIN LIGHT CHAIN 8, PROTEIN (NNOS, NEURONAL NITRIC OXIDE SYNTHASE)
Authors:Fan, J.S., Zhang, Q., Tochio, H., Li, M., Zhang, M.
Deposit date:2000-07-07
Release date:2001-02-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain.
J.Mol.Biol., 306, 2001
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