Author results

1GCC
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SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE
Descriptor:DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*GP*CP*GP*GP*CP*TP*A)-3'), ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Authors:Yamasaki, K., Allen, M.D., Ohme-Takagi, M., Tateno, M., Suzuki, M.
Deposit date:1998-03-13
Release date:1999-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
EMBO J., 17, 1998
1ILE
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ISOLEUCYL-TRNA SYNTHETASE
Descriptor:ISOLEUCYL-TRNA SYNTHETASE, ZINC ION
Authors:Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Schimmel, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-02-24
Release date:1999-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Enzyme structure with two catalytic sites for double-sieve selection of substrate.
Science, 280, 1998
1RRB
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THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE
Descriptor:RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE
Authors:Terada, T., Ito, Y., Shirouzu, M., Tateno, M., Hashimoto, K., Kigawa, T., Ebisuzaki, T., Takio, K., Shibata, T., Yokoyama, S., Smith, B.O., Laue, E.D., Cooper, J.A., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-03-26
Release date:1999-03-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.
J.Mol.Biol., 286, 1999
2GCC
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SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Descriptor:ATERF1
Authors:Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.
Deposit date:1998-03-13
Release date:1999-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
EMBO J., 17, 1998
3GCC
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SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, 46 STRUCTURES
Descriptor:ATERF1
Authors:Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.
Deposit date:1998-03-13
Release date:1999-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.
EMBO J., 17, 1998
5XVB
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[NIFE]-HYDROGENASE 2 FROM CITROBACTER SP. S-77 IN AN H2-REDUCED CONDITION
Descriptor:[NiFe]-hydrogenase 2 large subunit, [NiFe]-hydrogenase 2 small subunit, MAGNESIUM ION, ...
Authors:Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.
Deposit date:2017-06-27
Release date:2018-06-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Alternative O2-tolerant mechanism of [NiFe]-hydrogenase conducted by [4Fe-4S] cluster
To Be Published
5XVC
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[NIFE]-HYDROGENASE 2 FROM CITROBACTER SP. S-77 IN A FERRICYANIDE-OXIDIZED CONDITION
Descriptor:[NiFe]-hydrogenase 2 large subunit, [NiFe]-hydrogenase 2 small subunit, MAGNESIUM ION, ...
Authors:Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.
Deposit date:2017-06-27
Release date:2018-06-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Alternative O2-tolerant mechanism of [NiFe]-hydrogenase conducted by [4Fe-4S] cluster
To Be Published
5XVD
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[NIFE]-HYDROGENASE 2 FROM CITROBACTER SP. S-77 IN AN AIR-OXIDIZED CONDITION
Descriptor:[NiFe]-hydrogenase 2 large subunit, Hydrogenase-2 small chain, MAGNESIUM ION, ...
Authors:Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.
Deposit date:2017-06-27
Release date:2018-06-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Alternative O2-tolerant mechanism of [NiFe]-hydrogenase conducted by [4Fe-4S] cluster
To Be Published
1UL4
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SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4
Descriptor:squamosa promoter binding protein-like 4, ZINC ION
Authors:Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-09
Release date:2004-03-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
J.Mol.Biol., 337, 2004
1UL5
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SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7
Descriptor:squamosa promoter binding protein-like 7, ZINC ION
Authors:Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-09
Release date:2004-03-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
J.Mol.Biol., 337, 2004
1WID
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SOLUTION STRUCTURE OF THE B3 DNA-BINDING DOMAIN OF RAV1
Descriptor:DNA-binding protein RAV1
Authors:Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1
Plant Cell, 16, 2004
1WJ2
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SOLUTION STRUCTURE OF THE C-TERMINAL WRKY DOMAIN OF ATWRKY4
Descriptor:Probable WRKY transcription factor 4, ZINC ION
Authors:Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an Arabidopsis WRKY DNA binding domain.
Plant Cell, 17, 2005
1A8H
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METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor:METHIONYL-TRNA SYNTHETASE, ZINC ION
Authors:Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Lober, B., Giege, R., Moras, D., Yokoyama, S., Konno, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-03-26
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules.
Structure, 8, 2000
1YSE
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SOLUTION STRUCTURE OF THE MAR-BINDING DOMAIN OF SATB1
Descriptor:DNA-binding protein SATB1
Authors:Yamasaki, K., Yamaguchi, H.
Deposit date:2005-02-08
Release date:2006-01-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation
J.Biol.Chem., 281, 2006
5IY5
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ELECTRON TRANSFER COMPLEX OF CYTOCHROME C AND CYTOCHROME C OXIDASE AT 2.0 ANGSTROM RESOLUTION
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, S., Baba, J., Aoe, S., Shimada, A., Yamashita, E., Tsukihara, T.
Deposit date:2016-03-24
Release date:2017-01-11
Last modified:2017-02-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode
EMBO J., 36, 2017
3VU8
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METIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH METHIONYL-ADENYLATE ANALOGUE
Descriptor:Methionine--tRNA ligase, ZINC ION, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE
Authors:Konno, M., Kato-Murayama, M., Toma-Fukai, S., Uchikawa, E., Nureki, O., Yokoyama, S.
Deposit date:2012-06-22
Release date:2013-06-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published