Author results

6R83
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CRYOEM STRUCTURE AND MOLECULAR MODEL OF SQUID HEMOCYANIN (TODARODES PACIFICUS , TPH)
Descriptor:Hemocyanin subunit 1
Authors:Tanaka, Y., Kato, S., Stabrin, M., Raunser, S., Matsui, T., Gatsogiannis, C.
Deposit date:2019-03-31
Release date:2019-05-08
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Cryo-EM reveals the asymmetric assembly of squid hemocyanin
Iucrj, 2019
6JJU
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Sakuta, N., Watanabe, S., Inaba, K.
Deposit date:2019-02-27
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
6IDP
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CRYSTAL STRUCTURE OF VIBRIO CHOLERAE MATE TRANSPORTER VCMN IN THE STRAIGHT FORM
Descriptor:MATE family efflux transporter, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Kusakizako, T., Claxton, D.P., Tanaka, Y., Maturana, A.D., Kuroda, T., Ishitani, R., Mchaourab, H.S., Nureki, O.
Deposit date:2018-09-11
Release date:2019-01-16
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.205 Å)
Cite:Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
6IDR
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CRYSTAL STRUCTURE OF VIBRIO CHOLERAE MATE TRANSPORTER VCMN IN THE BENT FORM
Descriptor:MATE family efflux transporter, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Kusakizako, T., Claxton, D.P., Tanaka, Y., Maturana, A.D., Kuroda, T., Ishitani, R., Mchaourab, H.S., Nureki, O.
Deposit date:2018-09-11
Release date:2019-01-16
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
6IDS
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CRYSTAL STRUCTURE OF VIBRIO CHOLERAE MATE TRANSPORTER VCMN D35N MUTANT
Descriptor:MATE family efflux transporter, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Kusakizako, T., Claxton, D.P., Tanaka, Y., Maturana, A.D., Kuroda, T., Ishitani, R., Mchaourab, H.S., Nureki, O.
Deposit date:2018-09-11
Release date:2019-01-16
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
6AL2
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CRYSTAL STRUCTURE OF E. COLI YIDC AT 2.8 A RESOLUTION
Descriptor:Membrane protein insertase YidC, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Tanaka, Y., Tsukazaki, T., Izumioka, A., Hamid, A.A., Fujii, A.
Deposit date:2018-09-05
Release date:2018-11-07
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8-angstrom crystal structure of Escherichia coli YidC revealing all core regions, including flexible C2 loop.
Biochem. Biophys. Res. Commun., 505, 2018
6AL3
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LYS49 PLA2 BPII DERIVED FROM THE VENOM OF PROTOBOTHROPS FLAVOVIRIDIS.
Descriptor:Basic phospholipase A2 BP-II, SULFATE ION
Authors:Matsui, T., Kamata, S., Suzuki, A., Oda-Ueda, N., Ogawa, T., Tanaka, Y.
Deposit date:2018-09-05
Release date:2019-01-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:SDS-induced oligomerization of Lys49-phospholipase A2from snake venom.
Sci Rep, 9, 2019
6AIT
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CRYSTAL STRUCTURE OF E. COLI BEPA
Descriptor:Beta-barrel assembly-enhancing protease, ZINC ION, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Umar, M.S.M., Tanaka, Y., Kamikubo, H., Tsukazaki, T.
Deposit date:2018-08-24
Release date:2018-12-26
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:Structural Basis for the Function of the beta-Barrel Assembly-Enhancing Protease BepA.
J. Mol. Biol., 431, 2019
5ZTF
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STRUCTURE OF CA2+ ATPASE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Inoue, M., Watanabe, S., Inaba, K.
Deposit date:2018-05-03
Release date:2019-05-22
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay.
Cell Rep, 27, 2019
5Z3A
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GLYCOSIDASE WILD TYPE
Descriptor:Glycoside hydrolase 15-related protein, GLYCEROL, CITRIC ACID
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Glycosidase Wild Type
To Be Published
5Z3B
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GLYCOSIDASE Y48F
Descriptor:Glycoside hydrolase 15-related protein, GLYCEROL, CITRIC ACID
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Glycosidase Y48F
To Be Published
5Z3C
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GLYCOSIDASE E178A
Descriptor:Glycoside hydrolase 15-related protein, GLYCEROL
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Glycosidase E178A
To Be Published
5Z3D
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GLYCOSIDASE F290Y
Descriptor:Glycoside hydrolase 15-related protein, GLYCEROL, CITRIC ACID
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Glycosidase F290Y
To Be Published
5Z3E
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GLYCOSIDASE E335A
Descriptor:Glycoside hydrolase 15-related protein, GLYCEROL, CITRIC ACID
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Glycosidase E335A
To Be Published
5Z3F
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GLYCOSIDASE E335A IN COMPLEX WITH GLUCOSE
Descriptor:Glycoside hydrolase 15-related protein, BETA-D-GLUCOSE, GLYCEROL, ...
Authors:Tanaka, Y., Chen, M., Tagami, T., Yao, M., Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Glycosidase E335A in complex with glucose
To Be Published
5YO8
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CRYSTAL STRUCTURE OF BETA-C25/C30/C35-PRENE SYNTHASE
Descriptor:Tetraprenyl-beta-curcumene synthase
Authors:Fujihashi, M., Miki, K.
Deposit date:2017-10-27
Release date:2018-05-09
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass.
Chem Sci, 9, 2018
5YHF
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CRYSTAL STRUCTURE OF SECDF IN SUPER-MEMBRANE-FACING FORM
Descriptor:Protein translocase subunit SecDF, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER
Authors:Tanaka, Y., Tsukazaki, T., Yoshikaie, K., Furukawa, A.
Deposit date:2017-09-28
Release date:2018-02-14
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Remote Coupled Drastic beta-Barrel to beta-Sheet Transition of the Protein Translocation Motor.
Structure, 26, 2018
5YCK
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CRYSTAL STRUCTURE OF A MATE FAMILY PROTEIN DERIVED FROM CAMELINA SATIVA AT 2.3 ANGSTROM
Descriptor:multi drug efflux transporter, RUBIDIUM ION, (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Authors:Tanaka, Y., Tsukazaki, T., Iwaki, S.
Deposit date:2017-09-07
Release date:2017-09-27
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein
Structure, 25, 2017
5Y0L
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D122G/H130Y MUNTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, SODIUM ION, ...
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-18
Release date:2018-07-25
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.385 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5Y0M
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D36A/D122G/H130Y/E263Q MUNTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION, ...
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-18
Release date:2018-07-25
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYO
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D122G MUTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, SULFATE ION, CHLORIDE ION, ...
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYP
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D122R MUNTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, PHOSPHATE ION, GLYCEROL
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYQ
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D122K MUTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, PHOSPHATE ION, GLYCEROL
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYS
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., D122V MUNTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYT
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STRUCTURE OF 6-AMINOHEXANOATE-OLIGOMER HYDROLASE FROM ARTHROBACTER SP. KI72., H130Y MUNTANT
Descriptor:Endo-type 6-aminohexanoate oligomer hydrolase, SULFATE ION, GLYCEROL
Authors:Negoro, S., Shibata, N., Nagai, K., Higuchi, Y.
Deposit date:2017-07-10
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018