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1BXD
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BU of 1bxd by Molmil
NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ))
Authors:Tanaka, T, Saha, S.K, Tomomori, C, Ishima, R, Liu, D, Tong, K.I, Park, H, Dutta, R, Qin, L, Swindells, M.B, Yamazaki, T, Ono, A.M, Kainosho, M, Inouye, M, Ikura, M.
Deposit date:1998-10-02
Release date:1999-10-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ.
Nature, 396, 1998
4Y65
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BU of 4y65 by Molmil
Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation
Descriptor: Divalent-cation tolerance protein CutA
Authors:Tanaka, T, Matsuura, Y, Yutani, K.
Deposit date:2015-02-12
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation
To Be Published
4Y6I
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BU of 4y6i by Molmil
Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation
Descriptor: Divalent-cation tolerance protein CutA
Authors:Tanaka, T, Matsuura, Y, Yutani, K.
Deposit date:2015-02-13
Release date:2015-09-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation
To Be Published
1HZK
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BU of 1hzk by Molmil
SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE
Descriptor: C-1027 APOPROTEIN
Authors:Tanaka, T, Fukuda-Ishisaka, S, Hirama, M, Otani, T.
Deposit date:2001-01-25
Release date:2001-05-23
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore.
J.Mol.Biol., 309, 2001
1HZL
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BU of 1hzl by Molmil
SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE
Descriptor: C-1027 APOPROTEIN, C-1027 AROMATIZED CHROMOPHORE
Authors:Tanaka, T, Fukuda-Ishisaka, S, Hirama, M, Otani, T.
Deposit date:2001-01-25
Release date:2001-05-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore.
J.Mol.Biol., 309, 2001
7Y4Q
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BU of 7y4q by Molmil
Semaphorin 6D in complex with Plexin A1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1, ...
Authors:Tanaka, T, Neyazaki, M, Nogi, T.
Deposit date:2022-06-16
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4.7 Å)
Cite:Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D.
Protein Sci., 31, 2022
7Y4P
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BU of 7y4p by Molmil
Human Plexin A1, extracellular domains 1-4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1
Authors:Tanaka, T, Neyazaki, M, Nogi, T.
Deposit date:2022-06-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D.
Protein Sci., 31, 2022
7Y4O
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BU of 7y4o by Molmil
Rat Semaphorin 6D extracellular region
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin 6D
Authors:Tanaka, T, Neyazaki, M, Nogi, T.
Deposit date:2022-06-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D.
Protein Sci., 31, 2022
2UZI
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BU of 2uzi by Molmil
Crystal structure of HRAS(G12V) - anti-RAS Fv complex
Descriptor: ANTI-RAS FV HEAVY CHAIN, ANTI-RAS FV LIGHT CHAIN, GTPASE HRAS, ...
Authors:Tanaka, T, williams, R.L, Rabbitts, T.H.
Deposit date:2007-04-27
Release date:2007-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tumour Prevention by a Single Antibody Domain Targeting the Interaction of Signal Transduction Proteins with Ras.
Embo J., 26, 2007
2VH5
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BU of 2vh5 by Molmil
CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (disulfide free mutant) COMPLEX
Descriptor: ANTI-RAS FV HEAVY CHAIN, ANTI-RAS FV LIGHT CHAIN, GTPASE HRAS, ...
Authors:Tanaka, T, Williams, R.L, Rabbitts, T.H.
Deposit date:2007-11-19
Release date:2008-01-22
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional Intracellular Antibody Fragments Do not Require Invariant Intra-Domain Disulfide Bonds.
J.Mol.Biol., 376, 2008
5ZCZ
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BU of 5zcz by Molmil
Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Heavy metal binding protein
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5ZD0
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BU of 5zd0 by Molmil
Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: ubiquitin
Authors:Tanaka, T, Ikeya, T, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
1IKU
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BU of 1iku by Molmil
myristoylated recoverin in the calcium-free state, NMR, 22 structures
Descriptor: MYRISTIC ACID, RECOVERIN
Authors:Tanaka, T, Ames, J.B, Harvey, T.S, Stryer, L, Ikura, M.
Deposit date:1996-01-18
Release date:1996-07-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Sequestration of the membrane-targeting myristoyl group of recoverin in the calcium-free state.
Nature, 376, 1995
5Z4B
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BU of 5z4b by Molmil
GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Protein LG
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
7CLJ
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BU of 7clj by Molmil
Crystal structure of Thermoplasmatales archaeon heliorhodopsin E108D mutant
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, RETINAL, SULFATE ION, ...
Authors:Tanaka, T, Shihoya, W, Yamashita, K, Nureki, O.
Deposit date:2020-07-21
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for unique color tuning mechanism in heliorhodopsin.
Biochem.Biophys.Res.Commun., 533, 2020
1V4R
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BU of 1v4r by Molmil
Solution structure of Streptmycal repressor TraR
Descriptor: Transcriptional Repressor
Authors:Tanaka, T, Komatsu, C, Kobayashi, K, Sugai, M, Kataoka, M, Kohno, T.
Deposit date:2003-11-17
Release date:2005-03-01
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of Streptmycal repressor TraR
TO BE PUBLISHED
2YY6
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BU of 2yy6 by Molmil
Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5
Descriptor: SULFATE ION, phosphoglycolate phosphatase
Authors:Tanaka, T, Kumarevel, T.S, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5
To be Published
3X3U
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BU of 3x3u by Molmil
Crystal structure of wild-type of E. coli CutA1
Descriptor: Divalent-cation tolerance protein CutA
Authors:Tanaka, T, Matsuura, Y, Yutani, K.
Deposit date:2015-02-12
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of wild-type of E. coli CutA1
To be Published
2RRN
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BU of 2rrn by Molmil
Solution structure of SecDF periplasmic domain P4
Descriptor: Probable SecDF protein-export membrane protein
Authors:Tanaka, T, Tsukazaki, T, Echizen, Y, Nureki, O, Kohno, T.
Deposit date:2011-01-30
Release date:2011-05-18
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
2H09
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BU of 2h09 by Molmil
Crystal structure of diphtheria toxin repressor like protein from E. coli
Descriptor: Transcriptional regulator mntR
Authors:Kumarevel, T.S, Tanaka, T, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-14
Release date:2007-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the manganese transport regulatory protein from Escherichia coli.
Proteins, 2009
2YSW
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BU of 2ysw by Molmil
Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5
Descriptor: 3-dehydroquinate dehydratase
Authors:Tanaka, T, Kumarevel, T.S, Ebihara, A, Chen, L, Fu, Z.Q, Chrzas, J, Wang, B.C, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-04
Release date:2007-10-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5
To be Published
3U6Y
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BU of 3u6y by Molmil
Crystal structure of ALBA2-DNA complex
Descriptor: DNA (5'-D(*CP*CP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*G)-3'), DNA/RNA-binding protein Alba 2, ...
Authors:Kumarevel, T, Tanaka, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-10-13
Release date:2012-02-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of archaeal chromatin protein Alba2-double-stranded DNA complex from Aeropyrum pernix K1.
J.Biol.Chem., 287, 2012
2E85
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BU of 2e85 by Molmil
Crystal Structure of the Hydrogenase 3 Maturation protease
Descriptor: CALCIUM ION, Hydrogenase 3 maturation protease
Authors:Tanaka, T, Kumarevel, T.S, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-18
Release date:2008-01-22
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of hydrogenase maturating endopeptidase HycI from Escherichia coli
Biochem.Biophys.Res.Commun., 389, 2009
4W4Q
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BU of 4w4q by Molmil
Glucose isomerase structure determined by serial femtosecond crystallography at SACLA
Descriptor: CALCIUM ION, Xylose isomerase
Authors:Nango, E, Tanaka, T, Sugahara, M, Suzuki, M, Iwata, S.
Deposit date:2014-08-15
Release date:2014-11-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat.Methods, 12, 2015
413D
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BU of 413d by Molmil
A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
Descriptor: RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
Authors:Tanaka, Y, Fujii, S, Hiroaki, H, Sakata, T, Tanaka, T, Uesugi, S, Tomita, K.-I, Kyogoku, Y.
Deposit date:1998-07-10
Release date:1998-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999

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