Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7S0B
DownloadVisualize
BU of 7s0b by Molmil
Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-612-056 Fab Heavy Chain, N-612-056 Light Chain, ...
Authors:Tanaka, S, Barnes, C.O, Bjorkman, P.J.
Deposit date:2021-08-30
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display.
Cell Rep, 38, 2022
2QW7
DownloadVisualize
BU of 2qw7 by Molmil
Carboxysome Subunit, CcmL
Descriptor: Carbon dioxide concentrating mechanism protein ccmL, GLYCEROL
Authors:Tanaka, S, Sawaya, M.R, Kerfeld, C.A, Yeates, T.O.
Deposit date:2007-08-09
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
3I6P
DownloadVisualize
BU of 3i6p by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutM
Descriptor: Ethanolamine utilization protein eutM, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-07
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3IA0
DownloadVisualize
BU of 3ia0 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutS-G39V mutant
Descriptor: Ethanolamine utilization protein eutS
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-13
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I96
DownloadVisualize
BU of 3i96 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutS
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, Ethanolamine utilization protein eutS, ...
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-10
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I87
DownloadVisualize
BU of 3i87 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutL Open Form
Descriptor: CHLORIDE ION, Ethanolamine utilization protein eutL
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-09
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I71
DownloadVisualize
BU of 3i71 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutK C-terminal domain
Descriptor: CITRATE ANION, Ethanolamine utilization protein eutK
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-07
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
3I82
DownloadVisualize
BU of 3i82 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutL Closed Form
Descriptor: Ethanolamine utilization protein eutL
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-09
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
2PY8
DownloadVisualize
BU of 2py8 by Molmil
RbcX
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CHLORIDE ION, Hypothetical protein rbcX
Authors:Tanaka, S, Sawaya, M.R, Kerfeld, C.A, Yeates, T.O.
Deposit date:2007-05-15
Release date:2007-10-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803.
Acta Crystallogr.,Sect.D, 63, 2007
3A3P
DownloadVisualize
BU of 3a3p by Molmil
Crystal structure of complex between E201A/SA-subtilisin and Tk-propeptide
Descriptor: CALCIUM ION, Tk-subtilisin, ZINC ION
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin
J.Mol.Biol., 394, 2009
3BN4
DownloadVisualize
BU of 3bn4 by Molmil
Carboxysome Subunit, CcmK1
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 1, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-12-13
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
2Z30
DownloadVisualize
BU of 2z30 by Molmil
Crystal structure of complex form between mat-Tk-subtilisin and Tk-propeptide
Descriptor: CALCIUM ION, Tk-subtilisin, ZINC ION
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-05-29
Release date:2007-12-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation
J.Mol.Biol., 372, 2007
2Z2X
DownloadVisualize
BU of 2z2x by Molmil
Crystal structure of mature form of Tk-subtilisin
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-05-29
Release date:2007-12-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation
J.Mol.Biol., 372, 2007
2Z2Z
DownloadVisualize
BU of 2z2z by Molmil
Crystal structure of unautoprocessed form of Tk-subtilisin soaked by 10mM CaCl2
Descriptor: CALCIUM ION, Tk-subtilisin precursor
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-05-29
Release date:2007-12-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation
J.Mol.Biol., 372, 2007
2Z2Y
DownloadVisualize
BU of 2z2y by Molmil
Crystal structure of autoprocessed form of Tk-subtilisin
Descriptor: CALCIUM ION, Tk-subtilisin, ZINC ION
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2007-05-29
Release date:2007-12-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation
J.Mol.Biol., 372, 2007
2ZRQ
DownloadVisualize
BU of 2zrq by Molmil
Crystal structure of S324A-subtilisin
Descriptor: CALCIUM ION, Tk-subtilisin
Authors:Tanaka, S, Takeuchi, Y, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2008-08-28
Release date:2009-03-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of Tk-subtilisin folded without propeptide: requirement of propeptide for acceleration of folding
Febs Lett., 582, 2008
3A3O
DownloadVisualize
BU of 3a3o by Molmil
Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the five C-terminal residues
Descriptor: CALCIUM ION, Tk-subtilisin, ZINC ION
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin
J.Mol.Biol., 394, 2009
3A3N
DownloadVisualize
BU of 3a3n by Molmil
Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the two C-terminal residues
Descriptor: CALCIUM ION, Tk-subtilisin, ZINC ION
Authors:Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin
J.Mol.Biol., 394, 2009
3CIM
DownloadVisualize
BU of 3cim by Molmil
Carboxysome shell protein, CcmK2 C-terminal deletion mutant
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 2, GLYCEROL, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-03-11
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Insights from multiple structures of the shell proteins from the beta-carboxysome.
Protein Sci., 18, 2009
3DN9
DownloadVisualize
BU of 3dn9 by Molmil
Carboxysome Subunit, CcmK1 C-terminal deletion mutant
Descriptor: CcmK1 C-terminal deletion mutant, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-07-01
Release date:2009-01-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Insights from multiple structures of the shell proteins from the beta-carboxysome.
Protein Sci., 18, 2009
3DNC
DownloadVisualize
BU of 3dnc by Molmil
Carboxysome shell protein, CcmK2 C-terminal deletion mutant, with a closer spacing between hexamers
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 2, GLYCEROL, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-07-01
Release date:2009-01-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Insights from multiple structures of the shell proteins from the beta-carboxysome.
Protein Sci., 18, 2009
2Z9H
DownloadVisualize
BU of 2z9h by Molmil
Ethanolamine utilization protein, EutN
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, Ethanolamine utilization protein eutN
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-09-20
Release date:2007-10-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The crystal structure of ethanolamine utilization protein EutN from E. coli
To be Published
2ZQ5
DownloadVisualize
BU of 2zq5 by Molmil
Crystal structure of sulfotransferase STF1 from Mycobacterium tuberculosis H37Rv (type1 form)
Descriptor: Putative uncharacterized protein
Authors:Tanaka, S, Kimura, M, Kakuta, Y.
Deposit date:2008-08-06
Release date:2009-09-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of sulfotransferase STF1 from Mycobacterium tuberculosis H37Rv
To be Published
5WRJ
DownloadVisualize
BU of 5wrj by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and gastrin peptide
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, MAGNESIUM ION, Protein-tyrosine sulfotransferase 1, ...
Authors:Tanaka, S, Nishiyori, T, Kojo, H, Otsubo, R, Kakuta, Y.
Deposit date:2016-12-02
Release date:2017-09-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017
5WRI
DownloadVisualize
BU of 5wri by Molmil
Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and C4 peptide
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, ASP-PHE-GLU-ASP-TYR-GLU-PHE-ASP, GLYCEROL, ...
Authors:Tanaka, S, Nishiyori, T, Kojo, H, Otsubo, R, Kakuta, Y.
Deposit date:2016-12-02
Release date:2017-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.
Sci Rep, 7, 2017

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon