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1NCJ
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BU of 1ncj by Molmil
N-CADHERIN, TWO-DOMAIN FRAGMENT
Descriptor: CALCIUM ION, PROTEIN (N-CADHERIN), URANYL (VI) ION
Authors:Tamura, K, Shan, W.-S, Hendrickson, W.A, Colman, D.R, Shapiro, L.
Deposit date:1999-02-02
Release date:1999-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure-function analysis of cell adhesion by neural (N-) cadherin.
Neuron, 20, 1998
6E61
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BU of 6e61 by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A in complex with mixed-linkage heptasaccharide
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ...
Authors:Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:2018-07-23
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
6E9B
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BU of 6e9b by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide
Descriptor: Mixed-linkage glucan utilization locus (MLGUL) SGBP-B, SULFATE ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
Authors:Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:2018-07-31
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
6E60
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BU of 6e60 by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, mixed-linkage glucan utilization locus (MLGUL) SGBP-B
Authors:Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:2018-07-23
Release date:2019-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
7KV6
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BU of 7kv6 by Molmil
Surface glycan-binding protein B from Bacteroides fluxus in complex with mixed-linkage glucotriose
Descriptor: GUANIDINE, PKD domain protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KWB
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BU of 7kwb by Molmil
Surface glycan-binding protein B from Bacteroides thetaiotaomicron
Descriptor: BtSGBP-B
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-30
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV7
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BU of 7kv7 by Molmil
Surface glycan-binding protein B from Bacteroides fluxus in complex with laminaritriose
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, LYSINE, ...
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV5
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BU of 7kv5 by Molmil
Surface glycan-binding protein B from Bacteroides fluxus
Descriptor: DI(HYDROXYETHYL)ETHER, GUANIDINE, PKD domain protein
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV1
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BU of 7kv1 by Molmil
Surface glycan-binding protein A from Bacteroides uniformis
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COBALT HEXAMMINE(III), ...
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV2
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BU of 7kv2 by Molmil
Surface glycan-binding protein A from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RagB/SusD family nutrient uptake outer membrane protein, ...
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV3
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BU of 7kv3 by Molmil
Surface glycan-binding protein A from Bacteroides thetaiotaomicron in complex with laminarihexaose
Descriptor: RagB/SusD family nutrient uptake outer membrane protein, SULFATE ION, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KV4
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BU of 7kv4 by Molmil
Surface glycan-binding protein A from Bacteroides fluxus
Descriptor: SusD family protein
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-26
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
7KWC
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BU of 7kwc by Molmil
Surface glycan-binding protein B (truncated) from Bacteroides thetaiotaomicron
Descriptor: BtSGBP-B_31-285
Authors:Tamura, K, Brumer, H, Van Petegem, F.
Deposit date:2020-11-30
Release date:2021-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota.
J.Biol.Chem., 296, 2021
6VHO
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BU of 6vho by Molmil
Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G4G3G-NHCOCH2Br
Descriptor: Glycosyl hydrolase family 16, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-N-acetyl-beta-D-glucopyranosylamine
Authors:Tamura, K, Brumer, H, van Petegem, F.
Deposit date:2020-01-10
Release date:2021-01-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.148 Å)
Cite:Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases.
Acs Chem.Biol., 16, 2021
5NBO
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BU of 5nbo by Molmil
Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16
Descriptor: 1,2-ETHANEDIOL, Glycosyl hydrolase family 16
Authors:Hemsworth, G.R, Tamura, K, Dejean, G, Rogers, T.E, Pudlo, N.A, Urs, K, Jain, N, Martens, E.C, Brumer, H, Davies, G.J.
Deposit date:2017-03-02
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.
Cell Rep, 21, 2017
5NBP
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BU of 5nbp by Molmil
Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16 in complex with G4G4G3G Product
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glycosyl hydrolase family 16, ...
Authors:Hemsworth, G.R, Tamura, K, Dejean, G, Rogers, T.E, Pudlo, N.A, Urs, K, Jain, N, Martens, E.C, Brumer, H, Davies, G.J.
Deposit date:2017-03-02
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.
Cell Rep, 21, 2017
6PAL
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BU of 6pal by Molmil
Bacteroides uniformis endo-laminarinase BuGH158 from the beta(1,3)-glucan utilization locus
Descriptor: ACETATE ION, SULFATE ION, Uncharacterized protein
Authors:Tamura, K, Brumer, H, van Petegem, F.
Deposit date:2019-06-11
Release date:2020-04-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.818 Å)
Cite:Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human GutBacteroides.
Mbio, 11, 2020
7KR6
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BU of 7kr6 by Molmil
Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G3G-2F-DNP
Descriptor: Glycoside hydrolase family 16 protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-2-deoxy-2-fluoro-alpha-D-glucopyranose
Authors:Tamura, K, Brumer, H, van Petegem, F.
Deposit date:2020-11-18
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases.
Acs Chem.Biol., 16, 2021
1EW0
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BU of 1ew0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
Descriptor: FIXL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:2000-04-21
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1D06
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BU of 1d06 by Molmil
STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, nitrogen fixation regulatory protein fixL
Authors:Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
Deposit date:1999-09-09
Release date:2000-03-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1X3U
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BU of 1x3u by Molmil
Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium melilot
Descriptor: Transcriptional regulatory protein fixJ
Authors:Kurashima-Ito, K, Kasai, Y, Hosono, K, Tamura, K, Oue, S, Isogai, M, Ito, Y, Nakamura, H, Shiro, Y.
Deposit date:2005-05-10
Release date:2006-05-02
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter
Biochemistry, 44, 2005
5H34
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BU of 5h34 by Molmil
Crystal structure of the C-terminal domain of methionyl-tRNA synthetase (MetRS-C) in Nanoarchaeum equitans
Descriptor: Methionine-tRNA ligase
Authors:Suzuki, H, Kaneko, A, Yamamoto, T, Nambo, M, Umehara, T, Yoshida, H, Park, S.Y, Tamura, K.
Deposit date:2016-10-20
Release date:2017-06-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.748 Å)
Cite:Binding Properties of Split tRNA to the C-terminal Domain of Methionyl-tRNA Synthetase of Nanoarchaeum equitans.
J. Mol. Evol., 84, 2017
7FG6
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BU of 7fg6 by Molmil
Crystal structure of the Tyrosyl-tRNA synthetase (TyrRS) in Nanoarchaeum equitans
Descriptor: Tyrosine--tRNA ligase
Authors:Noguchi, H, Kamata, K, Park, S.Y, Tamura, K.
Deposit date:2021-07-26
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Nanoarchaeum equitans tyrosyl-tRNA synthetase and its aminoacylation activity toward tRNA Tyr with an extra guanosine residue at the 5'-terminus.
Biochem.Biophys.Res.Commun., 575, 2021
5Z5E
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BU of 5z5e by Molmil
Crystal structure of the Glycyl-tRNA synthetase (GlyRS) in Nanoarchaeum equitans
Descriptor: GLYCEROL, NEQ417, SULFATE ION
Authors:Noguchi, H, Park, S.Y, Tamura, K.
Deposit date:2018-01-18
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation.
Biochem.Biophys.Res.Commun., 511, 2019
6DMF
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BU of 6dmf by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A with cellohexaose
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Koropatkin, N.M, Bahr, C.M.
Deposit date:2018-06-05
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019

 

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