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3AW6
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BU of 3aw6 by Molmil
Crystal structure of tetragonal hen egg white lysozyme at 84.2% relative humidity
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Takayama, Y, Nakasako, M.
Deposit date:2011-03-11
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Biophys.Chem., 159, 2011
3AW7
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BU of 3aw7 by Molmil
Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Takayama, Y, Nakasako, M.
Deposit date:2011-03-11
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Biophys.Chem., 159, 2011
2CVC
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BU of 2cvc by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)
Descriptor: HEME C, High-molecular-weight cytochrome c precursor
Authors:Suto, K, Sato, M, Shibata, N, Kitamura, M, Morimoto, Y, Takayama, Y, Ozawa, K, Akutsu, H, Higuchi, Y, Yasuoka, N.
Deposit date:2005-06-02
Release date:2006-06-06
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of High-Molecular Weight Cytochrome c
To be Published
2DGE
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BU of 2dge by Molmil
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
Descriptor: Cytochrome c6, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION
Authors:Chida, H, Yokoyama, T, Kawai, F, Nakazawa, A, Akazaki, H, Takayama, Y, Hirano, T, Suruga, K, Satoh, T, Yamada, S, Kawachi, R, Unzai, S, Nishio, T, Park, S.-Y, Oku, T.
Deposit date:2006-03-11
Release date:2006-07-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett., 580, 2006
1K9A
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BU of 1k9a by Molmil
Crystal structure analysis of full-length carboxyl-terminal Src kinase at 2.5 A resolution
Descriptor: Carboxyl-terminal Src kinase
Authors:Ogawa, A, Takayama, Y, Nagata, A, Chong, K.T, Takeuchi, S, Sakai, H, Nakagawa, A, Nada, S, Okada, M, Tsukihara, T.
Deposit date:2001-10-28
Release date:2002-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the carboxyl-terminal Src kinase, Csk.
J.Biol.Chem., 277, 2002
2XDF
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BU of 2xdf by Molmil
Solution Structure of the Enzyme I Dimer Complexed with HPr Using Residual Dipolar Couplings and Small Angle X-Ray Scattering
Descriptor: PHOSPHOCARRIER PROTEIN HPR, PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE
Authors:Schwieters, C.D, Suh, J.-Y, Grishaev, A, Guirlando, R, Takayama, Y, Clore, G.M.
Deposit date:2010-04-30
Release date:2010-09-22
Last modified:2019-08-21
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution Structure of the 128 kDa Enzyme I Dimer from Escherichia Coli and its 146 kDa Complex with Hpr Using Residual Dipolar Couplings and Small- and Wide-Angle X-Ray Scattering.
J.Am.Chem.Soc., 132, 2010
2KX9
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BU of 2kx9 by Molmil
Solution Structure of the Enzyme I dimer Using Residual Dipolar Couplings and Small Angle X-Ray Scattering
Descriptor: Phosphoenolpyruvate-protein phosphotransferase
Authors:Schwieters, C.D, Suh, J, Grishaev, A, Takayama, Y, Guirlando, R, Clore, G.
Deposit date:2010-04-29
Release date:2010-09-15
Last modified:2019-05-08
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure of the 128 kDa enzyme I dimer from Escherichia coli and its 146 kDa complex with HPr using residual dipolar couplings and small- and wide-angle X-ray scattering.
J.Am.Chem.Soc., 132, 2010
2LOE
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BU of 2loe by Molmil
Structure of the Plasmodium 6-cysteine s48/45 Domain
Descriptor: 6-cysteine protein, putative
Authors:Cai, M, Arredondo, S.A, Clore, M.G, Miller, L.H, Takayama, Y, Macdonald, N.J, Enderson, E.D, Aravind, L.
Deposit date:2012-01-23
Release date:2012-04-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of the Plasmodium 6-cysteine s48/45 domain.
Proc.Natl.Acad.Sci.USA, 109, 2012
2L5H
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BU of 2l5h by Molmil
Solution Structure of the H189Q mutant of the Enzyme I dimer Using Residual Dipolar Couplings and Small Angle X-Ray Scattering
Descriptor: Phosphoenolpyruvate-protein phosphotransferase
Authors:Takayama, Y.D, Schwieters, C.D, Grishaev, A, Guirlando, R, Clore, G.
Deposit date:2010-11-01
Release date:2011-01-12
Last modified:2012-04-25
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Combined Use of Residual Dipolar Couplings and Solution X-ray Scattering To Rapidly Probe Rigid-Body Conformational Transitions in a Non-phosphorylatable Active-Site Mutant of the 128 kDa Enzyme I Dimer.
J.Am.Chem.Soc., 133, 2011
2YXC
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BU of 2yxc by Molmil
The H25M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2YYW
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BU of 2yyw by Molmil
The F20M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2YYX
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BU of 2yyx by Molmil
The Y65A mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2Z47
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BU of 2z47 by Molmil
The Y66L mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, HEME C
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-06-13
Release date:2008-06-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2EWK
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BU of 2ewk by Molmil
The T24V mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-11-03
Release date:2006-11-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
1WR5
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BU of 1wr5 by Molmil
Three dimensional Structure of the E41K mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Descriptor: Cytochrome c3, ETHANOL, HEME C
Authors:Tomimoto, Y, Ogata, H, Higuchi, Y.
Deposit date:2004-10-11
Release date:2004-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F.
Biophys.J., 85, 2003
1J0O
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BU of 1j0o by Molmil
High Resolution Crystal Structure of the wild type Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Descriptor: Cytochrome c3, ETHANOL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ozawa, K, Yasukawa, F, Kumagai, J, Ohmura, T, Cusanvich, M.A, Tomimoto, Y, Ogata, H, Higuchi, Y, Akutsu, H.
Deposit date:2002-11-19
Release date:2003-11-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F.
Biophys.J., 85, 2003
1J0P
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BU of 1j0p by Molmil
Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Descriptor: Cytochrome c3, ETHANOL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ozawa, K, Yasukawa, F, Kumagai, J, Ohmura, T, Cusanvich, M.A, Tomimoto, Y, Ogata, H, Higuchi, Y, Akutsu, H.
Deposit date:2002-11-19
Release date:2003-11-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.91 Å)
Cite:Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F.
Biophys.J., 85, 2003
7C6B
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BU of 7c6b by Molmil
Crystal structure of Ago2 MID domain in complex with 6-(3-(2-carboxyethyl)phenyl)purine riboside monophosphate
Descriptor: 3-[3-[9-[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]phenyl]propanoic acid, PHOSPHATE ION, Protein argonaute-2
Authors:Suzuki, M, Takahashi, Y, Saito, J, Miyagi, H, Shinohara, F.
Deposit date:2020-05-21
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:siRNA potency enhancement via chemical modifications of nucleotide bases at the 5'-end of the siRNA guide strand.
Rna, 27, 2021
7D7U
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BU of 7d7u by Molmil
Crystal structure of Ago2 MID domain in complex with 8-Br-adenosin-5'-monophosphate
Descriptor: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE, Protein argonaute-2
Authors:Suzuki, M, Takahashi, Y, Saito, J, Miyagi, H, Shinohara, F.
Deposit date:2020-10-06
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:siRNA potency enhancement via chemical modifications of nucleotide bases at the 5'-end of the siRNA guide strand.
Rna, 27, 2021

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