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3AI7
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CRYSTAL STRUCTURE OF BIFIDOBACTERIUM LONGUM PHOSPHOKETOLASE
Descriptor:Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, CALCIUM ION
Authors:Takahashi, K., Tagami, U., Shimba, N., Kashiwagi, T., Ishikawa, K., Suzuki, E.
Deposit date:2010-05-10
Release date:2010-09-15
Last modified:2014-01-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Bifidobacterium Longum phosphoketolase; key enzyme for glucose metabolism in Bifidobacterium
Febs Lett., 584, 2010
4Y1P
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CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE (SACI_0600) FROM SULFOLOBUS ACIDOCALDARIUS COMPLEX WITH 3-ISOPROPYLMALATE AND MG2+
Descriptor:3-isopropylmalate dehydrogenase, MAGNESIUM ION, 3-ISOPROPYLMALIC ACID, ...
Authors:Takahashi, K., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2015-02-08
Release date:2016-03-09
Last modified:2016-12-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization of two beta-decarboxylating dehydrogenases from Sulfolobus acidocaldarius
Extremophiles, 20, 2016
4YB4
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CRYSTAL STRUCTURE OF HOMOISOCITRATE DEHYDROGENASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH HOMOISOCITRATE, MAGNESIUM ION (II) AND NADH
Descriptor:Homoisocitrate dehydrogenase, MAGNESIUM ION, (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, ...
Authors:Takahashi, K., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2015-02-18
Release date:2016-03-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium(II) and NADH
To Be Published
3H1V
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HUMAN GLUCOKINASE IN COMPLEX WITH A SYNTHETIC ACTIVATOR
Descriptor:Glucokinase, ALPHA-D-GLUCOSE, 1-({5-[4-(methylsulfonyl)phenoxy]-2-pyridin-2-yl-1H-benzimidazol-6-yl}methyl)pyrrolidine-2,5-dione, ...
Authors:Kamata, K., Takahashi, K.
Deposit date:2009-04-14
Release date:2009-10-06
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:The design and optimization of a series of 2-(pyridin-2-yl)-1H-benzimidazole compounds as allosteric glucokinase activators.
Bioorg.Med.Chem., 17, 2009
1IYY
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NMR STRUCTURE OF GLN25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor:RIBONUCLEASE T1
Authors:Hatano, K., Kojima, M., Suzuki, E., Tanokura, M., Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2018-07-25
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
1F54
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SOLUTION STRUCTURE OF THE APO N-TERMINAL DOMAIN OF YEAST CALMODULIN
Descriptor:CALMODULIN
Authors:Ishida, H., Takahashi, K., Nakashima, K., Kumaki, Y., Nakata, M., Hikichi, K., Yazawa, M.
Deposit date:2000-06-13
Release date:2003-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structures of the N-terminal Domain of Yeast Calmodulin: Ca2+-Dependent Conformational Change and Its Functional Implication
Biochemistry, 39, 2000
1F55
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SOLUTION STRUCTURE OF THE CALCIUM BOUND N-TERMINAL DOMAIN OF YEAST CALMODULIN
Descriptor:CALMODULIN, CALCIUM ION
Authors:Ishida, H., Takahashi, K., Nakashima, K., Kumaki, Y., Nakata, M., Hikichi, K., Yazawa, M.
Deposit date:2000-06-13
Release date:2003-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structures of the N-terminal Domain of Yeast Calmodulin: Ca2+-Dependent Conformational Change and Its Functional Implication
Biochemistry, 39, 2000
1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
Descriptor:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2004-05-27
Release date:2005-03-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1TFO
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBITOR PROTEIN
Descriptor:Colicin D, Colicin D immunity protein
Authors:Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
Deposit date:2004-05-27
Release date:2005-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1DET
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RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP
Descriptor:RIBONUCLEASE T1, SODIUM ION, GUANOSINE-2'-MONOPHOSPHATE
Authors:Ishikawa, K., Suzuki, E., Tanokura, M., Takahashi, K.
Deposit date:1996-02-20
Release date:1996-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in complex with 2'-GMP.
Biochemistry, 35, 1996
1IPJ
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CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS COMPLEXES WITH N-ACETYL-D-GLUCOSAMINE
Descriptor:BETA-CONGLYCININ, BETA CHAIN, N-ACETYL-D-GLUCOSAMINE
Authors:Maruyama, N., Adachi, M., Takahashi, K., Yagasaki, K., Kohno, M., Takenaka, Y., Okuda, E., Nakagawa, S., Mikami, B., Utsumi, S.
Deposit date:2001-05-16
Release date:2002-05-16
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers.
Eur.J.Biochem., 268, 2001
1IPK
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CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS
Descriptor:BETA-CONGLYCININ, BETA CHAIN
Authors:Maruyama, N., Adachi, M., Takahashi, K., Yagasaki, K., Kohno, M., Takenaka, Y., Okuda, E., Nakagawa, S., Mikami, B., Utsumi, S.
Deposit date:2001-05-16
Release date:2002-05-16
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers.
Eur.J.Biochem., 268, 2001
1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor:TRYPSIN, BOWMAN-BIRK TYPE PROTEINASE INHIBITOR
Authors:Tsunogae, Y., Tanaka, I., Yamane, T., Kikkawa, J.-I., Ashida, T., Ishikawa, C., Watanabe, K., Nakamura, S., Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1Y43
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CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin II light chain, Aspergillopepsin II heavy chain, SULFATE ION
Authors:Sasaki, H., Nakagawa, A., Iwata, S., Muramatsu, T., Suganuma, M., Sawano, Y., Kojima, M., Kubota, K., Takahashi, K.
Deposit date:2004-11-30
Release date:2005-12-13
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Proc.Jpn.Acad.,Ser.B, 80, 2004
3TRS
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THE CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin-2 light chain, Aspergillopepsin-2 heavy chain, DIMETHYL SULFOXIDE
Authors:Sasaki, H., Kubota, K., Lee, W.C., Ohtsuka, J., Kojima, M., Takahashi, K., Tanokura, M.
Deposit date:2011-09-10
Release date:2012-08-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of an intermediate dimer of aspergilloglutamic peptidase that mimics the enzyme-activation product complex produced upon autoproteolysis.
J.Biochem., 152, 2012
5D45
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-(5-CYCLOPROPYL-2,3-DIPHENYL-1H-INDOL-1-YL)PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-(5-cyclopropyl-2,3-diphenyl-1H-indol-1-yl)propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D47
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-[5-CYCLOPROPYL-3-(3-METHOXYPYRIDIN-4-YL)-2-PHENYL-1H-INDOL-1-YL] PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl]propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D48
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-{5-CYCLOPROPYL-3-(3,5-DIMETHYL-1H-PYRAZOL-4-YL)-2-[3-(PROPAN-2-YLOXY) PHENYL]-1H-INDOL-1-YL}PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy)phenyl]-1H-indol-1-yl}propanoic acid, ...
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
5D4A
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CRYSTAL STRUCTURE OF FABP4 IN COMPLEX WITH 3-(2-PHENYL-1H-INDOL-1-YL)PROPANOIC ACID
Descriptor:Fatty acid-binding protein, adipocyte, 3-(2-phenyl-1H-indol-1-yl)propanoic acid
Authors:Tagami, U., Takahashi, K., Igarashi, S., Ejima, C., Yoshida, T., Takeshita, S., Miyanaga, W., Sugiki, M., Tokumasu, M., Hatanaka, T., Kashiwagi, T., Ishikawa, K., Miyano, H., Mizukoshi, T.
Deposit date:2015-08-07
Release date:2016-06-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Acs Med.Chem.Lett., 7, 2016
1A0F
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CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
Descriptor:GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
Authors:Nishida, M., Harada, S., Noguchi, S., Inoue, H., Takahashi, K., Satow, Y.
Deposit date:1997-11-29
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
2D17
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SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV-1 DIMERIZATION INITIATION SITE
Descriptor:5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Descriptor:RNA
Authors:Baba, S., Takahashi, K., Noguchi, S., Takaku, H., Koyanagi, Y., Yamamoto, N., Kawai, G.
Deposit date:2005-08-15
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
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