Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5B3J
DownloadVisualize
BU of 5b3j by Molmil
Activation of NMDA receptors and the mechanism of inhibition by ifenprodil
Descriptor: Fab, heavy chain, light chain, ...
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
Deposit date:2016-03-01
Release date:2016-05-11
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Activation of NMDA receptors and the mechanism of inhibition by ifenprodil
Nature, 534, 2016
5FXJ
DownloadVisualize
BU of 5fxj by Molmil
GluN1b-GluN2B NMDA receptor structure-Class X
Descriptor: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1, NMDA 2B
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa H, H.
Deposit date:2016-03-02
Release date:2016-05-25
Last modified:2016-06-15
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
5FXI
DownloadVisualize
BU of 5fxi by Molmil
GluN1b-GluN2B NMDA receptor structure in non-active-2 conformation
Descriptor: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
Deposit date:2016-03-02
Release date:2016-05-11
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
5FXK
DownloadVisualize
BU of 5fxk by Molmil
GluN1b-GluN2B NMDA receptor structure-Class Y
Descriptor: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
Deposit date:2016-03-02
Release date:2016-05-11
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
5FXG
DownloadVisualize
BU of 5fxg by Molmil
GLUN1B-GLUN2B NMDA RECEPTOR IN ACTIVE CONFORMATION
Descriptor: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
Deposit date:2016-03-02
Release date:2016-05-11
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
5FXH
DownloadVisualize
BU of 5fxh by Molmil
GluN1b-GluN2B NMDA receptor in non-active-1 conformation
Descriptor: N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B
Authors:Tajima, N, Karakas, E, Grant, T, Simorowski, N, Diaz-Avalos, R, Grigorieff, N, Furukawa, H.
Deposit date:2016-03-02
Release date:2016-05-11
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Activation of Nmda Receptors and the Mechanism of Inhibition by Ifenprodil.
Nature, 534, 2016
7TER
DownloadVisualize
BU of 7ter by Molmil
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 non-active2 conformation
Descriptor: Fab5 heavy chain, Fab5 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-05
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (5.23 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TES
DownloadVisualize
BU of 7tes by Molmil
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in Non-active1 conformation
Descriptor: Fab5 heavy chain, Fab5 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-05
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TEE
DownloadVisualize
BU of 7tee by Molmil
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 Non-active2-like
Descriptor: Fab2 heavy chain, Fab2 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-04
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (6.59 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TEB
DownloadVisualize
BU of 7teb by Molmil
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 non-active1-like
Descriptor: Fab2 heavy chain, Fab2 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-04
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TET
DownloadVisualize
BU of 7tet by Molmil
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 in non-active2-like conformation
Descriptor: Fab5 heavy chain, Fab5 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-05
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (4.45 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TE4
DownloadVisualize
BU of 7te4 by Molmil
Crystal structure of Fab2 anti-GluN2B antibody
Descriptor: Fab anti-GluN2B antibody, heavy chain, Fab2 anti-GluN2B antibody, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-04
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.456 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TE9
DownloadVisualize
BU of 7te9 by Molmil
Cryo-EM structure of GluN1b-2B NMDAR complexed to Fab2 class1
Descriptor: Fab2 heavy chain, Fab2 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-04
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.92 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
7TEQ
DownloadVisualize
BU of 7teq by Molmil
Cryo-EM structure of GluN1b-2B NMDAR in complex with Fab5 active conformation
Descriptor: Fab5 heavy chain, Fab5 light chain, Glutamate receptor ionotropic, ...
Authors:Tajima, N, Furukawa, H.
Deposit date:2022-01-05
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (7.51 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
3AEH
DownloadVisualize
BU of 3aeh by Molmil
Integral membrane domain of autotransporter Hbp
Descriptor: Hemoglobin-binding protease hbp autotransporter
Authors:Tajima, N, Park, S.-Y, Tame, J.R.H.
Deposit date:2010-02-04
Release date:2010-07-07
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:A novel intein-like autoproteolytic mechanism in autotransporter proteins.
J.Mol.Biol., 402, 2010
7TE6
DownloadVisualize
BU of 7te6 by Molmil
Crystal structure of GluN1b-2B ATD complexed to Fab5 anti-GluN2B antibody
Descriptor: Fab5 heavy chain, Fab5 light chain, Glutamate receptor ionotropic, ...
Authors:Regan, M, Tajima, N, Furukawa, H.
Deposit date:2022-01-04
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (4.55 Å)
Cite:Development and characterization of functional antibodies targeting NMDA receptors.
Nat Commun, 13, 2022
8F0O
DownloadVisualize
BU of 8f0o by Molmil
cryo-EM structure of homomeric kainate receptor GluK2 in resting (apo) state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor ionotropic, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2022-11-03
Release date:2023-11-08
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Partial agonism in kainate receptors
To Be Published
8GC4
DownloadVisualize
BU of 8gc4 by Molmil
Domoate-bound GluK2 kainate receptor in partially-open conformation 3
Descriptor: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2023-03-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Structural basis for kainate receptor activation by a partial agonist
To Be Published
8GC2
DownloadVisualize
BU of 8gc2 by Molmil
Domoate-bound GluK2 kainate receptor in partially-open conformation 1
Descriptor: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2023-03-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for kainate receptor activation by a partial agonist
To Be Published
8GC5
DownloadVisualize
BU of 8gc5 by Molmil
Domoate-bound GluK2 kainate receptors in non-active conformation
Descriptor: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2023-03-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Structural basis for kainate receptor activation by a partial agonist
To Be Published
8GC3
DownloadVisualize
BU of 8gc3 by Molmil
Domote-bound GluK2 kainate receptors in partially-open conformation 2
Descriptor: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Bogdanovic, N, Tajima, N.
Deposit date:2023-03-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for kainate receptor activation by a partial agonist
To Be Published
6USV
DownloadVisualize
BU of 6usv by Molmil
Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and SDZ 220-040
Descriptor: (2S)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid, GLYCEROL, GLYCINE, ...
Authors:Romero-Hernandez, A, Tajima, N, Chou, T, Furukawa, h.
Deposit date:2019-10-28
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Structural Basis of Functional Transitions in Mammalian NMDA Receptors.
Cell, 182, 2020
6USU
DownloadVisualize
BU of 6usu by Molmil
Crystal structure of GluN1/GluN2A ligand-binding domain in complex with L689,560 and glutamate
Descriptor: (2R,4S)-5,7-dichloro-4-[(phenylcarbamoyl)amino]-1,2,3,4-tetrahydroquinoline-2-carboxylic acid, GLUTAMIC ACID, Glutamate receptor ionotropic, ...
Authors:Romero-Hernandez, A, Tajima, N, Chou, T, Furukawa, H.
Deposit date:2019-10-28
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:Structural Basis of Functional Transitions in Mammalian NMDA Receptors.
Cell, 182, 2020
4JWX
DownloadVisualize
BU of 4jwx by Molmil
GluN2A ligand-binding core in complex with propyl-NHP5G
Descriptor: (2R)-amino(1-hydroxy-4-propyl-1H-pyrazol-5-yl)ethanoic acid, GluN2A
Authors:Hansen, K.B, Tajima, N, Risgaard, R, Perszyk, R.E, Jorgensen, L, Vance, K.M, Ogden, K.K, Clausen, R.P, Furukawa, H, Traynelis, S.F.
Deposit date:2013-03-27
Release date:2013-05-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural determinants of agonist efficacy at the glutamate binding site of N-methyl-d-aspartate receptors.
Mol.Pharmacol., 84, 2013
4JWY
DownloadVisualize
BU of 4jwy by Molmil
GluN2D ligand-binding core in complex with propyl-NHP5G
Descriptor: (2R)-amino(1-hydroxy-4-propyl-1H-pyrazol-5-yl)ethanoic acid, Glutamate receptor ionotropic, NMDA 2D
Authors:Hansen, K.B, Tajima, N, Risgaard, R, Perszyk, R.E, Jorgensen, L, Vance, K.M, Ogden, K.K, Clausen, R.P, Furukawa, H, Traynelis, S.F.
Deposit date:2013-03-27
Release date:2013-05-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural determinants of agonist efficacy at the glutamate binding site of N-methyl-d-aspartate receptors.
Mol.Pharmacol., 84, 2013

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon