Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1A8B
DownloadVisualize
BU of 1a8b by Molmil
RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOETHANOLAMINE
Descriptor: ANNEXIN V, CALCIUM ION, L-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE
Authors:Swairjo, M.A, Concha, N.O, Kaetzel, M.A, Dedman, J.R, Seaton, B.A.
Deposit date:1998-03-23
Release date:1998-06-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ca(2+)-bridging mechanism and phospholipid head group recognition in the membrane-binding protein annexin V.
Nat.Struct.Biol., 2, 1995
1A8A
DownloadVisualize
BU of 1a8a by Molmil
RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOSERINE
Descriptor: ANNEXIN V, CALCIUM ION, L-ALPHA-GLYCEROPHOSPHORYLSERINE
Authors:Swairjo, M.A, Concha, N.O, Kaetzel, M.A, Dedman, J.R, Seaton, B.A.
Deposit date:1998-03-23
Release date:1998-06-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ca(2+)-bridging mechanism and phospholipid head group recognition in the membrane-binding protein annexin V.
Nat.Struct.Biol., 2, 1995
1BDL
DownloadVisualize
BU of 1bdl by Molmil
HIV-1 (2:31-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386
Descriptor: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
Authors:Swairjo, M.A, Abdel-Meguid, S.S.
Deposit date:1998-05-10
Release date:1998-08-12
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
1PYB
DownloadVisualize
BU of 1pyb by Molmil
Crystal Structure of Aquifex aeolicus Trbp111: a Structure-Specific tRNA Binding Protein
Descriptor: tRNA-binding protein Trbp111
Authors:Swairjo, M.A, Morales, A.J, Wang, C.C, Ortiz, A.R, Schimmel, P.
Deposit date:2003-07-08
Release date:2003-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of trbp111: a structure-specific tRNA-binding protein.
Embo J., 19, 2000
1RIQ
DownloadVisualize
BU of 1riq by Molmil
The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase
Descriptor: Alanyl-tRNA synthetase
Authors:Swairjo, M.A, Otero, F.J, Yang, X.-L, Lovato, M.A, Skene, R.J, McRee, D.E, Ribas de Pouplana, L, Schimmel, P.
Deposit date:2003-11-17
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Alanyl-tRNA Synthetase Crystal Structure and Design for Acceptor-Stem Recognition
Mol.Cell, 13, 2004
1YFR
DownloadVisualize
BU of 1yfr by Molmil
crystal structure of alanyl-tRNA synthetase in complex with ATP and magnesium
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Alanyl-tRNA synthetase, MAGNESIUM ION
Authors:Swairjo, M.A, Schimmel, P.R.
Deposit date:2005-01-03
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1YFS
DownloadVisualize
BU of 1yfs by Molmil
The crystal structure of alanyl-tRNA synthetase in complex with L-alanine
Descriptor: ALANINE, Alanyl-tRNA synthetase
Authors:Swairjo, M.A, Schimmel, P.R.
Deposit date:2005-01-03
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1YGB
DownloadVisualize
BU of 1ygb by Molmil
Crystal Structure of the catalytic fragment of alanyl-tRNA synthetase in complex with L-serine
Descriptor: Alanyl-tRNA synthetase, SERINE
Authors:Swairjo, M.A, Schimmel, P.R.
Deposit date:2005-01-04
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1YFT
DownloadVisualize
BU of 1yft by Molmil
The crystal structure of the catalytic fragment of alanyl-tRNA synthetase in complex wtih glycine
Descriptor: Alanyl-tRNA synthetase, GLYCINE
Authors:Swairjo, M.A, Schimmel, P.R.
Deposit date:2005-01-03
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
3ERS
DownloadVisualize
BU of 3ers by Molmil
Crystal Structure of E. coli Trbp111
Descriptor: tRNA-binding protein ygjH
Authors:Swairjo, M.A.
Deposit date:2008-10-03
Release date:2008-12-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of Trbp111: a tructure specific tRNA binding protein
Embo J., 19, 2000
1BDQ
DownloadVisualize
BU of 1bdq by Molmil
HIV-1 (2:31-37, 47, 82) PROTEASE COMPLEXED WITH INHIBITOR SB203386
Descriptor: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
Authors:Swairjo, M.A, Abdel-Meguid, S.S.
Deposit date:1998-05-10
Release date:1998-08-12
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
1BDR
DownloadVisualize
BU of 1bdr by Molmil
HIV-1 (2: 31, 33-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386
Descriptor: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE, HIV-1 PROTEASE
Authors:Swairjo, M.A, Abdel-Meguid, S.S.
Deposit date:1998-05-10
Release date:1998-10-14
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease.
Biochemistry, 37, 1998
3D2O
DownloadVisualize
BU of 3d2o by Molmil
Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB
Descriptor: AZIDE ION, CHLORIDE ION, LITHIUM ION, ...
Authors:Swairjo, M.A.
Deposit date:2008-05-08
Release date:2009-05-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
J.Bacteriol., 191, 2009
6N9A
DownloadVisualize
BU of 6n9a by Molmil
Crystal Structure of Thermotoga maritima threonylcarbamoyladenosine biosynthesis complex TsaB2D2E2 bound to ATP and carboxy-AMP
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, 5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Swairjo, M.A, Stec, B.
Deposit date:2018-12-01
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conformational communication mediates the reset step in t6A biosynthesis.
Nucleic Acids Res., 47, 2019
8DL3
DownloadVisualize
BU of 8dl3 by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, complexed with queuine
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Queuosine salvage protein
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-07-06
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
5K9G
DownloadVisualize
BU of 5k9g by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with Tris
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, ...
Authors:Alvarez, J, Stec, B, Swairjo, M.A.
Deposit date:2016-05-31
Release date:2016-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
2AZX
DownloadVisualize
BU of 2azx by Molmil
Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase
Descriptor: 72-MER, GLYCEROL, MAGNESIUM ION, ...
Authors:Yang, X.L, Otero, F.J, Ewalt, K.L, Liu, J, Swairjo, M.A, Kohrer, C, RajBhandary, U.L, Skene, R.J, McRee, D.E, Schimmel, P.
Deposit date:2005-09-12
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.
Embo J., 25, 2006
5K95
DownloadVisualize
BU of 5k95 by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with 8-oxo-GTP
Descriptor: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase FolE2, ZINC ION
Authors:Alvarez, J, Stec, B, Swairjo, M.A.
Deposit date:2016-05-31
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
5JYX
DownloadVisualize
BU of 5jyx by Molmil
Crystal structure of the covalent thioimide intermediate of the archaeosine synthase QueF-Like
Descriptor: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Archeaosine synthase QueF-Like, SODIUM ION
Authors:Mei, X, Swairjo, M.A.
Deposit date:2016-05-15
Release date:2016-11-09
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
5K0P
DownloadVisualize
BU of 5k0p by Molmil
Crystal structure of the archaeosine synthase QueF-Like in the apo form
Descriptor: Archeaosine synthase QueF-Like, TETRAETHYLENE GLYCOL, THIOCYANATE ION, ...
Authors:Mei, X, Swairjo, M.A.
Deposit date:2016-05-17
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
4F8B
DownloadVisualize
BU of 4f8b by Molmil
Crystal Structure of the Covalent Thioimide Intermediate of Unimodular Nitrile Reductase QueF
Descriptor: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, MAGNESIUM ION, ...
Authors:Stec, B, Swairjo, M.A.
Deposit date:2012-05-17
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
4FGC
DownloadVisualize
BU of 4fgc by Molmil
Crystal Structure of Active Site Mutant C55A of Nitrile Reductase QueF, Bound to Substrate PreQ0
Descriptor: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CALCIUM ION, ...
Authors:Stec, B, Swairjo, M.A.
Deposit date:2012-06-04
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
1BCW
DownloadVisualize
BU of 1bcw by Molmil
RECOMBINANT RAT ANNEXIN V, T72A MUTANT
Descriptor: ANNEXIN V, CALCIUM ION, SULFATE ION
Authors:Mo, Y.D, Swairjo, M.A, Li, C.W, Head, J.F, Seaton, B.A.
Deposit date:1998-05-04
Release date:1998-11-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutational and crystallographic analyses of interfacial residues in annexin V suggest direct interactions with phospholipid membrane components.
Biochemistry, 37, 1998
1BCZ
DownloadVisualize
BU of 1bcz by Molmil
RECOMBINANT RAT ANNEXIN V, T72S MUTANT
Descriptor: ANNEXIN V, CALCIUM ION, SULFATE ION
Authors:Mo, Y.D, Swairjo, M.A, Li, C.W, Head, J.F, Seaton, B.A.
Deposit date:1998-05-04
Release date:1998-11-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mutational and crystallographic analyses of interfacial residues in annexin V suggest direct interactions with phospholipid membrane components.
Biochemistry, 37, 1998
1BC1
DownloadVisualize
BU of 1bc1 by Molmil
RECOMBINANT RAT ANNEXIN V, QUADRUPLE MUTANT (T72K, S144K, S228K, S303K)
Descriptor: ANNEXIN V, CALCIUM ION, SULFATE ION
Authors:Mo, Y.D, Swairjo, M.A, Li, C.W, Head, J.F, Seaton, B.A.
Deposit date:1998-05-04
Release date:1998-11-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Mutational and crystallographic analyses of interfacial residues in annexin V suggest direct interactions with phospholipid membrane components.
Biochemistry, 37, 1998

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon