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2ZW9
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, S-ADENOSYLMETHIONINE
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2008-12-01
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
2ZWA
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE, CITRIC ACID, ...
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2008-12-01
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
2ZZK
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CRYSTAL STRUCTURE OF TRNA WYBUTOSINE SYNTHESIZING ENZYME TYW4
Descriptor:Leucine carboxyl methyltransferase 2, CITRIC ACID, TETRAETHYLENE GLYCOL
Authors:Suzuki, Y., Noma, A., Suzuki, T., Ishitani, R., Nureki, O.
Deposit date:2009-02-17
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
2Z2U
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CRYSTAL STRUCTURE OF ARCHAEAL TYW1
Descriptor:UPF0026 protein MJ0257
Authors:Suzuki, Y., Ishitani, R., Nureki, O.
Deposit date:2007-05-28
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA
J.Mol.Biol., 372, 2007
1UAR
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CRYSTAL STRUCTURE OF RHODANESE FROM THERMUS THERMOPHILUS HB8
Descriptor:Rhodanese, GLYCEROL
Authors:Suzuki, Y., Kakuta, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-17
Release date:2004-09-21
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Rhodanese from Thermus thermophilus HB8
To be published
5YIN
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HEN EGG-WHITE LYSOZYME PRECIPITANT-FREE ORTHORHOMBIC FORM
Descriptor:Lysozyme C
Authors:Suzuki, Y., Tsuge, H., Uehara, Y.
Deposit date:2017-10-06
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Precipitant-free lysozyme crystals grown by centrifugal concentration reveal structural changes
CRYST.GROWTH DES., 2018
1SPK
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SOLUTION STRUCTURE OF RSGI RUH-010, AN SH3 DOMAIN FROM MOUSE CDNA
Descriptor:RIKEN cDNA 1300006M19
Authors:Suzuki, Y., Abe, T., Hirota, H., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-17
Release date:2004-09-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-010, an SH3 Domain from Mouse cDNA
To be Published
5B0Y
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CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3 WITH THE CROTONYLATED LYSINE 122
Descriptor:Histone H3.2, Histone H4, Histone H2A type 1-B/E, ...
Authors:Suzuki, Y., Horikoshi, N., Kurumizaka, H.
Deposit date:2015-11-13
Release date:2016-01-27
Method:X-RAY DIFFRACTION (2.557 Å)
Cite:Crystal structure of the nucleosome containing histone H3 with crotonylated lysine 122
Biochem.Biophys.Res.Commun., 469, 2016
5B0Z
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THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.2, AT 1.98 A RESOLUTION
Descriptor:Histone H3.2, Histone H4, Histone H2A type 1-B/E, ...
Authors:Suzuki, Y., Horikoshi, N., Kato, D., Kurumizaka, H.
Deposit date:2015-11-14
Release date:2016-01-27
Method:X-RAY DIFFRACTION (1.987 Å)
Cite:Crystal structure of the nucleosome containing histone H3 with crotonylated lysine 122
Biochem.Biophys.Res.Commun., 469, 2016
3AH3
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CRYSTAL STRUCTURE OF LR5-1, 3-ISOPROPYLMALATE DEHYDROGENASE CREATED BY DIRECTED EVOLUTION
Descriptor:Homoisocitrate dehydrogenase, SULFATE ION, 1,2-ETHANEDIOL
Authors:Tomita, T., Suzuki, Y., Kuzuyama, T., Nishiyama, M.
Deposit date:2010-04-13
Release date:2011-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Enhancement of the latent 3-isopropylmalate dehydrogenase activity of promiscuous homoisocitrate dehydrogenase by directed evolution
Biochem.J., 431, 2010
4H52
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WILD-TYPE INFLUENZA N2 NEURAMINIDASE COVALENT COMPLEX WITH 3-FLUORO-NEU5AC
Descriptor:Neuraminidase, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Vavricka, C.J., Liu, Y., Kiyota, H., Sriwilaijaroen, N., Qi, J., Tanaka, K., Wu, Y., Li, Q., Li, Y., Yan, J., Suzuki, Y., Gao, G.F.
Deposit date:2012-09-18
Release date:2013-02-20
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Influenza neuraminidase operates via a nucleophilic mechanism and can be targeted by covalent inhibitors
Nat Commun, 4, 2013
4H53
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INFLUENZA N2-TYR406ASP NEURAMINIDASE IN COMPLEX WITH BETA-NEU5AC
Descriptor:Neuraminidase, CALCIUM ION, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Vavricka, C.J., Liu, Y., Kiyota, H., Sriwilaijaroen, N., Qi, J., Tanaka, K., Wu, Y., Li, Q., Li, Y., Yan, J., Suzuki, Y., Gao, G.F.
Deposit date:2012-09-18
Release date:2013-02-20
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Influenza neuraminidase operates via a nucleophilic mechanism and can be targeted by covalent inhibitors
Nat Commun, 4, 2013
1UOK
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CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
Descriptor:OLIGO-1,6-GLUCOSIDASE
Authors:Watanabe, K., Hata, Y., Kizaki, H., Katsube, Y., Suzuki, Y.
Deposit date:1998-07-28
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.
J.Mol.Biol., 269, 1997
5YP1
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP2
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH DPP4 INHIBITOR FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, (2S,5R)-1-[2-[[1-(hydroxymethyl)cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP3
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH ILE-PRO FROM PSEUDOXANTHOMONAS MEXICANA
Descriptor:Dipeptidyl aminopeptidase 4, ISOLEUCINE, PROLINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP4
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH LYS-PRO FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL, LYSINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
2V0X
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THE DIMERIZATION DOMAIN OF LAP2ALPHA
Descriptor:LAMINA-ASSOCIATED POLYPEPTIDE 2 ISOFORMS ALPHA/ZETA
Authors:Bradley, C.M., Jones, S., Huang, Y., Suzuki, Y., Kvaratskhelia, M., Hickman, A.B., Craigie, R., Dyda, F.
Deposit date:2007-05-20
Release date:2007-06-26
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Dimerization of Lap2Alpha, a Component of the Nuclear Lamina.
Structure, 15, 2007
3WOI
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CRYSTAL STRUCTURE OF THE DAP BII (S657A)
Descriptor:dipeptidyl aminopeptidase BII, GLYCEROL, ZINC ION
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOJ
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CRYSTAL STRUCTURE OF THE DAP BII
Descriptor:dipeptidyl aminopeptidase BII, GLYCEROL, ZINC ION
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOK
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CRYSTAL STRUCTURE OF THE DAP BII (SPACE)
Descriptor:dipeptidyl aminopeptidase BII, GLYCEROL, ZINC ION
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOL
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CRYSTAL STRUCTURE OF THE DAP BII DIPEPTIDE COMPLEX I
Descriptor:dipeptidyl aminopeptidase BII, VALINE, TYROSINE, ...
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOM
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CRYSTAL STRUCTURE OF THE DAP BII DIPEPTIDE COMPLEX II
Descriptor:dipeptidyl aminopeptidase BII, VALINE, TYROSINE, ...
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WON
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CRYSTAL STRUCTURE OF THE DAP BII DIPEPTIDE COMPLEX III
Descriptor:dipeptidyl aminopeptidase BII, VALINE, TYROSINE, ...
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOO
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CRYSTAL STRUCTURE OF THE DAP BII HEXAPEPTIDE COMPLEX I
Descriptor:dipeptidyl aminopeptidase BII, Angiotensin II, GLYCEROL, ...
Authors:Sakamoto, Y., Suzuki, Y., Iizuka, I., Tateoka, C., Roppongi, S., Fujimoto, M., Nonaka, T., Ogasawara, W., Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014