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5AXH
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BU of 5axh by Molmil
Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus, D312G mutant in complex with isomaltohexaose
Descriptor: Dextranase, GLYCEROL, PHOSPHATE ION, ...
Authors:Suzuki, N, Kishine, N, Fujimoto, Z, Sakurai, M, Momma, M, Ko, J.A, Nam, S.H, Kimura, A, Kim, Y.M.
Deposit date:2015-07-29
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
J.Biochem., 159, 2016
5AXG
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BU of 5axg by Molmil
Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
Descriptor: 1,2-ETHANEDIOL, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Dextranase, ...
Authors:Suzuki, N, Kishine, N, Fujimoto, Z, Sakurai, M, Momma, M, Ko, J.A, Nam, S.H, Kimura, A, Kim, Y.M.
Deposit date:2015-07-29
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
J.Biochem., 159, 2016
3WNO
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BU of 3wno by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltooctaose
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNM
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BU of 3wnm by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltoheptaose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNL
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BU of 3wnl by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltohexaose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNK
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BU of 3wnk by Molmil
Crystal Structure of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase
Descriptor: ACETATE ION, CADMIUM ION, CALCIUM ION, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNN
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BU of 3wnn by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltooctaose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3AI5
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BU of 3ai5 by Molmil
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein
Descriptor: 1,2-ETHANEDIOL, yeast enhanced green fluorescent protein,Ubiquitin
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3AI4
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BU of 3ai4 by Molmil
Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein
Descriptor: SULFATE ION, yeast enhanced green fluorescent protein,DNA polymerase iota
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
1X2W
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BU of 1x2w by Molmil
Crystal Structure of Apo-Habu IX-bp at pH 4.6
Descriptor: CHLORIDE ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ...
Authors:Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
1X2T
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BU of 1x2t by Molmil
Crystal Structure of Habu IX-bp at pH 6.5
Descriptor: CALCIUM ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ...
Authors:Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
3VMP
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BU of 3vmp by Molmil
Crystal structure of dextranase from Streptococcus mutans in complex with 4,5-epoxypentyl alpha-D-glucopyranoside
Descriptor: 5-hydroxypentyl alpha-D-glucopyranoside, Dextranase, PHOSPHATE ION
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Okuyama, M, Mori, H, Funane, K, Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
3VMN
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BU of 3vmn by Molmil
Crystal structure of dextranase from Streptococcus mutans
Descriptor: Dextranase, PHOSPHATE ION
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Okuyama, M, Mori, H, Funane, K, Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
3VMO
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BU of 3vmo by Molmil
Crystal structure of dextranase from Streptococcus mutans in complex with isomaltotriose
Descriptor: Dextranase, PHOSPHATE ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Okuyama, M, Mori, H, Funane, K, Kimura, A.
Deposit date:2011-12-14
Release date:2012-02-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66
J.Biol.Chem., 287, 2012
2DDB
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BU of 2ddb by Molmil
Crystal structure of pseudecin from Pseudechis porphyriacus
Descriptor: FORMIC ACID, GLYCEROL, Pseudecin, ...
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2DDA
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BU of 2dda by Molmil
Crystal structure of pseudechetoxin from Pseudechis australis
Descriptor: FORMIC ACID, GLYCEROL, Pseudechetoxin, ...
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2006-01-25
Release date:2007-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
2EPF
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BU of 2epf by Molmil
Crystal Structure of Zinc-Bound Pseudecin From Pseudechis Porphyriacus
Descriptor: Pseudecin, SODIUM ION, ZINC ION
Authors:Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H.
Deposit date:2007-03-29
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain
Acta Crystallogr.,Sect.D, 64, 2008
3VHT
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BU of 3vht by Molmil
Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Descriptor: Green fluorescent protein, Green fluorescent protein,ATPase WRNIP1, Ubiquitin, ...
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2011-09-06
Release date:2012-10-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3VHS
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BU of 3vhs by Molmil
Crystal structure of UBZ of human WRNIP1
Descriptor: ATPase WRNIP1, SODIUM ION, ZINC ION
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2011-09-06
Release date:2012-10-10
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3WUP
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BU of 3wup by Molmil
Crystal Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Polymerase Eta
Descriptor: CHLORIDE ION, DNA polymerase eta, GLYCEROL, ...
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, S.
Deposit date:2014-05-01
Release date:2015-06-17
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 283, 2016
8B4Z
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BU of 8b4z by Molmil
Rosellinia necatrix megabirnavirus 1-W779 full capsid
Descriptor: Major capsid protein A
Authors:Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N.
Deposit date:2022-09-21
Release date:2023-02-22
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture.
Plos Pathog., 19, 2023
8B59
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BU of 8b59 by Molmil
Rosellinia necatrix megabirnavirus 1-W779 Crown protein
Descriptor: RnMBV1 Crown protein
Authors:Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N.
Deposit date:2022-09-22
Release date:2023-02-22
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture.
Plos Pathog., 19, 2023
5ND1
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BU of 5nd1 by Molmil
Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus
Descriptor: Capsid protein
Authors:Mata, C.P, Luque, D, Gomez Blanco, J, Rodriguez, J.M, Suzuki, N, Ghabrial, S.A, Carrascosa, J.L, Trus, B.L, Caston, J.R.
Deposit date:2017-03-07
Release date:2017-11-29
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Acquisition of functions on the outer capsid surface during evolution of double-stranded RNA fungal viruses.
PLoS Pathog., 13, 2017
5X7G
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BU of 5x7g by Molmil
Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase
Descriptor: CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, GLYCEROL, ...
Authors:Fujimoto, Z, Kishine, N, Suzuki, N, Suzuki, R, Momma, M, Funane, K.
Deposit date:2017-02-26
Release date:2017-04-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017
5X7H
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BU of 5x7h by Molmil
Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltoheptaose
Descriptor: CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, MALONATE ION, ...
Authors:Fujimoto, Z, Kishine, N, Suzuki, N, Suzuki, R, Momma, M, Funane, K.
Deposit date:2017-02-26
Release date:2017-04-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017

 

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