Author results

5KNB
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CRYSTAL STRUCTURE OF THE 2 ADP-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (3.251 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KNC
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CRYSTAL STRUCTURE OF THE 3 ADP-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KND
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CRYSTAL STRUCTURE OF THE PI-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
3WMT
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CRYSTAL STRUCTURE OF FERULOYL ESTERASE B FROM ASPERGILLUS ORYZAE
Descriptor:Probable feruloyl esterase B-1, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION
Authors:Suzuki, K., Ishida, T., Igarashi, K., Koseki, T., Fushinobu, S.
Deposit date:2013-11-25
Release date:2014-08-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad
Proteins, 2014
2E28
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CRYSTAL STRUCTURE ANALYSIS OF PYRUVATE KINASE FROM BACILLUS STEAROTHERMOPHILUS
Descriptor:Pyruvate kinase, SULFATE ION
Authors:Suzuki, K.
Deposit date:2006-11-09
Release date:2008-02-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of pyruvate kinase from Geobacillus stearothermophilus.
J.Biochem., 144, 2008
4IIB
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IIC
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH ISOFAGOMINE
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IID
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH 1-DEOXYNOJIRIMYCIN
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IIE
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH CALYSTEGINE B(2)
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IIF
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH CASTANOSPERMINE
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IIG
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH D-GLUCOSE
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
4IIH
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH THIOCELLOBIOSE
Descriptor:Beta-glucosidase 1, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
Deposit date:2012-12-20
Release date:2013-04-10
Last modified:2013-07-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of glycoside hydrolase family 3 beta-glucosidase 1 from Aspergillus aculeatus
Biochem.J., 452, 2013
5XHJ
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CRYSTAL STRUCTURE OF P450BM3 WITH 5-CYCLOHEXYLVALEROYL-L-TRYPTOPHAN
Descriptor:Bifunctional cytochrome P450/NADPH--P450 reductase, PROTOPORPHYRIN IX CONTAINING FE, TRYPTOPHAN, ...
Authors:Suzuki, K., Shoji, O., Stanfield, J.K., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y.
Deposit date:2017-04-21
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules
CATALYSIS SCIENCE AND TECHNOLOGY, 7, 2017
5B18
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CRYSTAL STRUCTURE OF A DARUNAVIR RESISTANT HIV-1 PROTEASE
Descriptor:Protease, CHLORIDE ION, ACETATE ION
Authors:Suzuki, K., Ode, H., Nakashima, M., Sugiura, W., Watanabe, N., Suzuki, A., Iwatani, Y.
Deposit date:2015-11-30
Release date:2016-04-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unique Flap Conformation in an HIV-1 Protease with High-Level Darunavir Resistance
Front Microbiol, 7, 2016
3WFL
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CRTSTAL STRUCTURE OF GLYCOSIDE HYDROLASE FAMILY 5 BETA-MANNANASE FROM TALAROMYCES TRACHYSPERMUS
Descriptor:beta-mannanase, N-ACETYL-D-GLUCOSAMINE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Suzuki, K., Ichinose, H., Kamino, K., Ogasawara, W., Kaneko, S., Fushinobu, S.
Deposit date:2013-07-19
Release date:2014-07-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, cloning, functional expression, structure, and characterization of a thermostable beta-mannanase from Talaromyces trachyspermus and its efficiency in production of mannooligosaccharides from coffee wastes
To be Published
5DGQ
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CRYSTAL STRUCTURE OF GH9 EXO-BETA-D-GLUCOSAMINIDASE PBPRA0520
Descriptor:Putative endoglucanase-related protein, SODIUM ION
Authors:Suzuki, K., Honda, Y., Fushinobu, S.
Deposit date:2015-08-28
Release date:2015-12-09
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of an inverting glycoside hydrolase family 9 exo-beta-D-glucosaminidase and the design of glycosynthase.
Biochem.J., 473, 2016
5DGR
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CRYSTAL STRUCTURE OF GH9 EXO-BETA-D-GLUCOSAMINIDASE PBPRA0520, GLUCOSAMINE COMPLEX
Descriptor:Putative endoglucanase-related protein, SODIUM ION, D-GLUCOSAMINE
Authors:Suzuki, K., Honda, Y., Fushinobu, S.
Deposit date:2015-08-28
Release date:2015-12-09
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of an inverting glycoside hydrolase family 9 exo-beta-D-glucosaminidase and the design of glycosynthase.
Biochem.J., 473, 2016
1KFU
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CRYSTAL STRUCTURE OF HUMAN M-CALPAIN FORM II
Descriptor:M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
Authors:Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.
Deposit date:2001-11-23
Release date:2001-12-07
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
1KFX
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CRYSTAL STRUCTURE OF HUMAN M-CALPAIN FORM I
Descriptor:M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
Authors:Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., Bode, W.
Deposit date:2001-11-23
Release date:2001-12-07
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
1V28
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SOLUTION STRUCTURE OF PARALYTIC PEPTIDE OF THE WILD SILKMOTH, ANTHERAEA YAMAMAI
Descriptor:Paralytic Peptide
Authors:Kawaguchi, K., Ying, A., Suzuki, K., Kumaki, Y., Demura, M., Nitta, K.
Deposit date:2003-10-09
Release date:2004-10-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of paralytic peptide of the wild Silkmoth Antheraea yamamai by NMR
To be Published
1V53
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THE CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM BACILLUS COAGULANS
Descriptor:3-isopropylmalate dehydrogenase
Authors:Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.
Deposit date:2003-11-20
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
To be Published
1V5B
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THE STRUCTURE OF THE MUTANT, S225A AND E251L, OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM BACILLUS COAGULANS
Descriptor:3-isopropylmalate dehydrogenase, SULFATE ION
Authors:Fujita, K., Minami, H., Suzuki, K., Tsunoda, M., Sekiguchi, T., Mizui, R., Tsuzaki, S., Nakamura, S., Takenaka, A.
Deposit date:2003-11-22
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of a highly thermo-stabilized mutant of 3-isopropylmalate dehydrogenase from Bacillus coagulans: An evaluation of local packing density in the hydrophobic core
To be Published
2E2F
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SOLUTION STRUCTURE OF DSP
Descriptor:Diapausin
Authors:Kouno, T., Mizuguchi, M., Suzuki, K., Kawano, K.
Deposit date:2006-11-12
Release date:2007-11-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The structure of a novel insect peptide explains its Ca2+ channel blocking and antifungal activities
Biochemistry, 46, 2007
2RTT
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF CHI18AC FROM STREPTOMYCES COELICOLOR
Descriptor:ChiC
Authors:Okumura, A., Uemura, M., Yamada, N., Chikaishi, E., Takai, T., Yoshio, S., Akagi, K., Morita, J., Lee, Y., Yokogawa, D., Suzuki, K., Watanabe, T., Ikegami, T.
Deposit date:2013-08-26
Release date:2014-08-27
Method:SOLUTION NMR
Cite:Solution structure of the Chitin-binding domain of chitinase Chi18aC from Streptomyces coelicolor
To be Published
3ACF
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CRYSTAL STRUCTURE OF CARBOHYDRATE-BINDING MODULE FAMILY 28 FROM CLOSTRIDIUM JOSUI CEL5A IN A LIGAND-FREE FORM
Descriptor:Beta-1,4-endoglucanase, CALCIUM ION, SULFATE ION
Authors:Tsukimoto, K., Takada, R., Araki, Y., Suzuki, K., Karita, S., Wakagi, T., Shoun, H., Watanabe, T., Fushinobu, S.
Deposit date:2010-01-04
Release date:2010-03-02
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010