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6TX3
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BU of 6tx3 by Molmil
HPF1 bound to catalytic fragment of PARP2
Descriptor: 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide, Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2,Poly [ADP-ribose] polymerase 2
Authors:Suskiewicz, M.J, Ahel, I.
Deposit date:2020-01-13
Release date:2020-02-19
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Nature, 579, 2020
6FH1
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BU of 6fh1 by Molmil
Protein arginine kinase McsB in the apo state
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, IMIDAZOLE, ...
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH4
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BU of 6fh4 by Molmil
CtsR C-terminal domain with bound phospho-arginine
Descriptor: PHOSPHATE ION, Transcriptional regulator CtsR, phospho-arginine
Authors:Suskiewicz, M.J, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH2
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BU of 6fh2 by Molmil
Protein arginine kinase McsB in the AMP-PN-bound state
Descriptor: 1,2-ETHANEDIOL, AMP PHOSPHORAMIDATE, Protein-arginine kinase
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH3
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BU of 6fh3 by Molmil
Protein arginine kinase McsB in the pArg-bound state
Descriptor: 1,2-ETHANEDIOL, Protein-arginine kinase, phospho-arginine
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6TX1
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BU of 6tx1 by Molmil
HPF1 from Nematostella vectensis
Descriptor: Predicted protein
Authors:Suskiewicz, M.J, Ahel, I.
Deposit date:2020-01-13
Release date:2020-02-19
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (2.091 Å)
Cite:HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Nature, 579, 2020
6TX2
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BU of 6tx2 by Molmil
Human HPF1
Descriptor: Histone PARylation factor 1, SODIUM ION
Authors:Suskiewicz, M.J, Ahel, I.
Deposit date:2020-01-13
Release date:2020-02-19
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Nature, 579, 2020
5HBN
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BU of 5hbn by Molmil
ClpC N-terminal domain with bound phospho-arginine
Descriptor: ACETATE ION, Negative regulator of genetic competence ClpC/MecB, SULFATE ION, ...
Authors:Suskiewicz, M.J, Clausen, T.
Deposit date:2016-01-01
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Arginine phosphorylation marks proteins for degradation by a Clp protease.
Nature, 539, 2016
6TV6
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BU of 6tv6 by Molmil
Octameric McsB from Bacillus subtilis.
Descriptor: MAGNESIUM ION, Protein-arginine kinase
Authors:Suskiewicz, M.J, Hajdusits, B, Meinhart, A, Clausen, T.
Deposit date:2020-01-09
Release date:2021-07-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:McsB forms a gated kinase chamber to mark aberrant bacterial proteins for degradation.
Elife, 10, 2021
8ODR
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BU of 8odr by Molmil
Mimetic of UBC9-SUMO1
Descriptor: SULFATE ION, SUMO-conjugating enzyme UBC9, Small ubiquitin-related modifier 1
Authors:Coste, F, Goffinont, S, Suskiewicz, M.J.
Deposit date:2023-03-09
Release date:2023-06-07
Last modified:2023-07-19
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural insights into the regulation of the human E2∼SUMO conjugate through analysis of its stable mimetic.
J.Biol.Chem., 299, 2023
6TVH
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BU of 6tvh by Molmil
Selenomethionine-substituted HPF1 from Nematostella vectensis
Descriptor: Predicted protein
Authors:Ariza, A.
Deposit date:2020-01-09
Release date:2020-02-19
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Nature, 579, 2020
6ZK7
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BU of 6zk7 by Molmil
Crystal Structure of human PYROXD1/FAD complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1
Authors:Meinhart, A, Asanovic, I, Martinez, J, Clausen, T.
Deposit date:2020-06-30
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The oxidoreductase PYROXD1 uses NAD(P) + as an antioxidant to sustain tRNA ligase activity in pre-tRNA splicing and unfolded protein response.
Mol.Cell, 81, 2021
5D4W
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BU of 5d4w by Molmil
Crystal structure of Hsp104
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Putative heat shock protein
Authors:Heuck, A, Schitter-Sollner, S, Clausen, T.
Deposit date:2015-08-09
Release date:2016-12-07
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for the disaggregase activity and regulation of Hsp104.
Elife, 5, 2016
8ADK
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BU of 8adk by Molmil
Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster
Descriptor: CHLORIDE ION, GLYCEROL, Poly(ADP-ribose) glycohydrolase, ...
Authors:Ariza, A, Fontana, P.
Deposit date:2022-07-08
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.474 Å)
Cite:Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling.
Nat Commun, 14, 2023
8ADJ
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BU of 8adj by Molmil
Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster in complex with PARG inhibitor PDD00017272
Descriptor: 1-[(2,5-dimethylpyrazol-3-yl)methyl]-N-(1-methylcyclopropyl)-3-[(2-methyl-1,3-thiazol-5-yl)methyl]-2,4-bis(oxidanylidene)quinazoline-6-sulfonamide, CHLORIDE ION, GLYCEROL, ...
Authors:Ariza, A, Fontana, P.
Deposit date:2022-07-08
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.508 Å)
Cite:Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling.
Nat Commun, 14, 2023
6WZ9
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BU of 6wz9 by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Descriptor: DNA, Histone H2A, Histone H2B 1.1, ...
Authors:Halic, M, Bilokapic, S.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020
6X0M
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BU of 6x0m by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Descriptor: DNA (167-MER), Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2
Authors:Halic, M, Bilokapic, S.
Deposit date:2020-05-16
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020
6WZ5
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BU of 6wz5 by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Descriptor: DNA (153-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Halic, M, Bilokapic, S.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020
6X0L
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BU of 6x0l by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Descriptor: DNA (167-MER), Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2
Authors:Halic, M, Bilokapic, S.
Deposit date:2020-05-16
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020
6X0N
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BU of 6x0n by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Descriptor: DNA (167-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Halic, M, Bilokapic, S.
Deposit date:2020-05-16
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020

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PDB entries from 2024-04-17

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