Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5X6U
DownloadVisualize
BU of 5x6u by Molmil
Crystal structure of human heteropentameric complex
Descriptor: Ragulator complex protein LAMTOR1, Ragulator complex protein LAMTOR2, Ragulator complex protein LAMTOR3, ...
Authors:Yonehara, R, Nada, S, Nakai, T, Nakai, M, Kitamura, A, Ogawa, A, Nakatsumi, H, Nakayama, K.I, Li, S, Standley, D.M, Yamashita, E, Nakagawa, A, Okada, M.
Deposit date:2017-02-23
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the assembly of the Ragulator-Rag GTPase complex.
Nat Commun, 8, 2017
5X6V
DownloadVisualize
BU of 5x6v by Molmil
Crystal structure of human heteroheptameric complex
Descriptor: ACETATE ION, Ragulator complex protein LAMTOR1, Ragulator complex protein LAMTOR2, ...
Authors:Yonehara, R, Nada, S, Nakai, T, Nakai, M, Kitamura, A, Ogawa, A, Nakatsumi, H, Nakayama, K.I, Li, S, Standley, D.M, Yamashita, E, Nakagawa, A, Okada, M.
Deposit date:2017-02-23
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the assembly of the Ragulator-Rag GTPase complex.
Nat Commun, 8, 2017
2M1X
DownloadVisualize
BU of 2m1x by Molmil
TICAM-1 TIR domain structure
Descriptor: TIR domain-containing adapter molecule 1
Authors:Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F.
Deposit date:2012-12-07
Release date:2014-01-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M1W
DownloadVisualize
BU of 2m1w by Molmil
TICAM-2 TIR domain
Descriptor: TIR domain-containing adapter molecule 2
Authors:Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F.
Deposit date:2012-12-07
Release date:2014-01-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
2N5L
DownloadVisualize
BU of 2n5l by Molmil
Regnase-1 C-terminal domain
Descriptor: Ribonuclease ZC3H12A
Authors:Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
2N5J
DownloadVisualize
BU of 2n5j by Molmil
Regnase-1 N-terminal domain
Descriptor: Ribonuclease ZC3H12A
Authors:Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
2N5K
DownloadVisualize
BU of 2n5k by Molmil
Regnase-1 Zinc finger domain
Descriptor: Ribonuclease ZC3H12A, ZINC ION
Authors:Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F.
Deposit date:2015-07-18
Release date:2016-03-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
7DZY
DownloadVisualize
BU of 7dzy by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
Descriptor: Fab Heavy chain of enhancing antibody 2490, Fab light chain of enhancing antibody 2490, Spike glycoprotein
Authors:Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
Deposit date:2021-01-26
Release date:2021-06-02
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZX
DownloadVisualize
BU of 7dzx by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2
Descriptor: Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein
Authors:Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
Deposit date:2021-01-26
Release date:2021-06-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZW
DownloadVisualize
BU of 7dzw by Molmil
Apo spike protein from SARS-CoV2
Descriptor: Spike glycoprotein
Authors:Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
Deposit date:2021-01-26
Release date:2021-06-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
8H4M
DownloadVisualize
BU of 8h4m by Molmil
Crystal Structure of GTP-bound Irgb6_T95D mutant
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Okuma, H, Sakai, N, Kato, T, Imasaki, T, Nitta, R.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
To Be Published
8H4O
DownloadVisualize
BU of 8h4o by Molmil
Crystal Structure of nucleotide-free Irgb6_T95D mutant
Descriptor: T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Okuma, H, Sakai, N, Kato, T, Imasaki, T, Nitta, R.
Deposit date:2022-10-11
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
To Be Published
6ISV
DownloadVisualize
BU of 6isv by Molmil
Structure of acetophenone reductase from Geotrichum candidum NBRC 4597 in complex with NAD
Descriptor: Acetophenone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
Authors:Koesoema, A.A, Sugiyama, Y, Senda, M, Senda, T, Matsuda, T.
Deposit date:2018-11-19
Release date:2019-09-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.
Appl.Microbiol.Biotechnol., 103, 2019
5GKR
DownloadVisualize
BU of 5gkr by Molmil
Crystal structure of SLE patient-derived anti-DNA antibody in complex with oligonucleotide
Descriptor: DNA (5'-D(P*TP*TP*TP*T)-3'), IgG2, Fab (heavy chain), ...
Authors:Arimori, T, Sakakibara, S, Kikutani, H, Takagi, J.
Deposit date:2016-07-05
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
5GKS
DownloadVisualize
BU of 5gks by Molmil
Crystal structure of SLE patient-derived anti-DNA antibody
Descriptor: IgG2, Fab (heavy chain), PHOSPHATE ION, ...
Authors:Arimori, T, Sakakibara, S, Kikutani, H, Takagi, J.
Deposit date:2016-07-05
Release date:2017-07-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
5H9V
DownloadVisualize
BU of 5h9v by Molmil
Crystal structure of Regnase PIN domain, form I
Descriptor: Ribonuclease ZC3H12A, SODIUM ION
Authors:Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
Deposit date:2015-12-29
Release date:2016-03-16
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
5H9W
DownloadVisualize
BU of 5h9w by Molmil
Crystal structure of Regnase PIN domain, form II
Descriptor: Ribonuclease ZC3H12A, SODIUM ION
Authors:Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
Deposit date:2015-12-29
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
7VES
DownloadVisualize
BU of 7ves by Molmil
Crystal Structure of nucleotide-free Irgb6
Descriptor: T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Sakai, N, Nitta, R.
Deposit date:2021-09-10
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6.
Life Sci Alliance, 5, 2022
7VEX
DownloadVisualize
BU of 7vex by Molmil
Crystal Structure of GTP-bound Irgb6
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Sakai, N, Nitta, R.
Deposit date:2021-09-10
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6.
Life Sci Alliance, 5, 2022
7XOL
DownloadVisualize
BU of 7xol by Molmil
Cryo-EM structure of single empty ring 2 (SER2) of GroEL-UGT1A complex at 3.2 Ang. resolution
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOS
DownloadVisualize
BU of 7xos by Molmil
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOK
DownloadVisualize
BU of 7xok by Molmil
Cryo-EM structure of double occupied ring (DOR) of GroEL-UGT1A complex at 2.7 Ang. resolution
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XON
DownloadVisualize
BU of 7xon by Molmil
Cryo-EM structure of empty ring subunit 1 (ER1) from single empty ring of GroEL-UGT1A complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOO
DownloadVisualize
BU of 7xoo by Molmil
Cryo-EM structure of empty ring subunit 2 (ER2) from GroEL-UGT1A single empty ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOR
DownloadVisualize
BU of 7xor by Molmil
Cryo-EM structure of occupied ring subunit 3 (OR3) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon