Search by PDB author

Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4
Descriptor:	COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
Authors:	Murakawa, T, Kurihara, K, Shoji, M, Shibazaki, C, Sunami, T, Tamada, T, Yano, N, Yamada, T, Kusaka, K, Suzuki, M, Shigeta, Y, Kuroki, R, Hayashi, H, Yano, Y, Tanizawa, K, Adachi, M, Okajima, T.
Deposit date:	2019-11-08
Release date:	2020-04-29
Last modified:	2023-11-22
Method:	NEUTRON DIFFRACTION (1.14 Å), X-RAY DIFFRACTION
Cite:	Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing. Proc.Natl.Acad.Sci.USA, 117, 2020

6KMF

FimA type V pilus from P.gingivalis
Descriptor:	Major fimbrium subunit FimA type-1
Authors:	Shibata, S, Shoji, M, Matsunami, H, Matthews, M, Imada, K, Nakayama, K, Wolf, M.
Deposit date:	2019-07-31
Release date:	2020-04-15
Last modified:	2024-03-27
Method:	ELECTRON MICROSCOPY (3.6 Å)
Cite:	Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange. Nat Microbiol, 5, 2020

6JZJ

Structure of FimA type-2 (FimA2) prepilin of the type V major fimbrium
Descriptor:	Major fimbrium subunit FimA type-2, SULFATE ION
Authors:	Okada, K, Shoji, M, Nakayam, K, Imada, K.
Deposit date:	2019-05-02
Release date:	2020-04-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange. Nat Microbiol, 5, 2020

6JZK

Structure of FimA type-1 (FimA1) prepilin of the type V major fimbrium
Descriptor:	GLYCEROL, Major fimbrium subunit FimA type-1, S,R MESO-TARTARIC ACID, ...
Authors:	Okada, K, Shoji, M, Nakayam, K, Imada, K.
Deposit date:	2019-05-02
Release date:	2020-04-15
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange. Nat Microbiol, 5, 2020

6KJK

Structure of the N-terminal domain of PorA
Descriptor:	N-terminal domain of PorA (28-171)
Authors:	Handa, Y, Sato, K, Shoji, M, Nakayama, K, Imada, K.
Deposit date:	2019-07-22
Release date:	2020-07-22
Last modified:	2020-12-16
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system. Sci Rep, 10, 2020

7WIS

Catalytic intermediate structure of N381A mutant of copper amine oxidase from Arthrobacter globiformis
Descriptor:	COPPER (II) ION, GLYCEROL, PHENYLACETALDEHYDE, ...
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2022-01-04
Release date:	2022-11-16
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase. Chem Sci, 13, 2022

7WIR

Holo form of N381A mutant of copper amine oxidase from Arthrobacter globiformis
Descriptor:	COPPER (II) ION, GLYCEROL, Phenylethylamine oxidase
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2022-01-04
Release date:	2022-11-16
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase. Chem Sci, 13, 2022

3LIU

Crystal structure of Putative cell adhesion protein (YP_001304840.1) from Parabacteroides distasonis ATCC 8503 at 2.05 A resolution
Descriptor:	1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2010-01-25
Release date:	2010-02-09
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

3PAY

Crystal structure of a putative adhesin (BACOVA_04077) from Bacteroides ovatus at 2.50 A resolution
Descriptor:	DI(HYDROXYETHYL)ETHER, putative adhesin
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2010-10-19
Release date:	2010-11-10
Last modified:	2020-04-22
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

3R4R

Crystal structure of a fimbrial assembly protein (BDI_3522) from Parabacteroides distasonis ATCC 8503 at 2.38 A resolution
Descriptor:	1,2-ETHANEDIOL, SULFATE ION, hypothetical fimbrial assembly protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2011-03-17
Release date:	2011-03-30
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4DGU

Crystal structure of a putative cell adhesion protein (BT0320) from Bacteroides thetaiotaomicron VPI-5482 at 2.37 A resolution
Descriptor:	CHLORIDE ION, ZINC ION, putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2012-01-26
Release date:	2012-02-15
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.37 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4EPS

Crystal structure of a fimbrial protein (BACOVA_04982) from Bacteroides ovatus ATCC 8483 at 1.85 A resolution
Descriptor:	CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2012-04-17
Release date:	2012-06-13
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

8J6G

Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
Descriptor:	2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2023-04-25
Release date:	2023-09-20
Method:	NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
Cite:	Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor Acs Catalysis, 2023

3GF8

Crystal structure of putative polysaccharide binding proteins (DUF1812) (NP_809975.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.20 A resolution
Descriptor:	1,2-ETHANEDIOL, putative polysaccharide binding proteins (DUF1812)
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2009-02-26
Release date:	2009-03-24
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 A resolution Acta Crystallogr.,Sect.F, 66, 2010

4QDG

Crystal structure of a putative adhesin (BT2657) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution (PSI Community Target, Nakayama)
Descriptor:	1,2-ETHANEDIOL, MAGNESIUM ION, Putative adhesin
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2014-05-13
Release date:	2014-06-11
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4Q98

Crystal structure of a fimbrilin (fimA) from Porphyromonas gingivalis W83 at 1.30 A resolution (PSI Community Target, Nakayama)
Descriptor:	Major fimbrial subunit protein, SODIUM ION
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2014-04-29
Release date:	2014-06-04
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4QB7

Crystal structure of a fimbrial protein (BVU_2522) from Bacteroides vulgatus ATCC 8482 at 2.55 A resolution
Descriptor:	CHLORIDE ION, SULFATE ION, Uncharacterized protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2014-05-06
Release date:	2014-07-02
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4RDB

Crystal structure of an immunoreactive 32 kDa antigen PG49 (PG_0181) from Porphyromonas gingivalis W83 at 1.45 A resolution (PSI Community Target, Nakayama)
Descriptor:	1,2-ETHANEDIOL, ACETONE, Immunoreactive 32 kDa antigen PG49
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2014-09-18
Release date:	2014-12-03
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4H40

Crystal structure of a putative cell adhesion protein (BF2867) from Bacteroides fragilis NCTC 9343 at 2.57 A resolution
Descriptor:	CHLORIDE ION, putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2012-09-14
Release date:	2012-10-03
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.57 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4GPV

Crystal structure of a putative cell adhesion protein (BACEGG_00536) from Bacteroides eggerthii DSM 20697 at 1.67 A resolution
Descriptor:	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2012-08-21
Release date:	2012-09-19
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.67 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4JG5

Crystal structure of a putative cell adhesion protein (BDI_3519) from Parabacteroides distasonis ATCC 8503 at 2.34 A resolution (PSI Community Target, Nakayama)
Descriptor:	Putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2013-02-28
Release date:	2013-03-20
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (2.34 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4JRF

Crystal structure of a putative cell adhesion protein (BACOVA_01548) from Bacteroides ovatus ATCC 8483 at 1.98 A resolution (PSI Community Target, Nakayama)
Descriptor:	CALCIUM ION, CHLORIDE ION, SULFATE ION, ...
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2013-03-21
Release date:	2013-04-03
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.98 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

4K4K

Crystal structure of a putative cell adhesion protein (BACUNI_00621) from Bacteroides uniformis ATCC 8492 at 1.67 A resolution
Descriptor:	CHLORIDE ION, Putative cell adhesion protein
Authors:	Joint Center for Structural Genomics (JCSG)
Deposit date:	2013-04-12
Release date:	2013-05-01
Last modified:	2023-02-01
Method:	X-RAY DIFFRACTION (1.67 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

5CAG

Crystal structure of a putative adhesin (BACOVA_02677) from Bacteroides ovatus ATCC 8483 at 3.00 A resolution (PSI Community Target, Nakayama)
Descriptor:	SULFATE ION, Uncharacterized protein
Authors:	Joint Center for Structural Genomics (JCSG), Nakayama, K.
Deposit date:	2015-06-29
Release date:	2015-10-14
Last modified:	2020-04-22
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016

5Y1A

HBP35 of Porphyromonas gingivalis
Descriptor:	35 kDa hemin binding protein
Authors:	Kakuda, S, Suzuki, M, Sato, K.
Deposit date:	2017-07-20
Release date:	2018-07-25
Last modified:	2024-03-27
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system. Mol. Microbiol., 110, 2018

12 >

Total results:	32
Displayed results:	25
Sorted by:	Hit score (from highest)