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1IC4
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BU of 1ic4 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
Descriptor: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
Authors:Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC7
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BU of 1ic7 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX
Descriptor: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
Authors:Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC5
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BU of 1ic5 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX
Descriptor: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
Authors:Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
Deposit date:2001-03-30
Release date:2001-07-18
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
5XMH
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BU of 5xmh by Molmil
Crystal structure of an IgM rheumatoid factor YES8c in complex with IgG1 Fc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain, ...
Authors:Shiroishi, M, Shimokawa, K, Lee, J.M, Kusakabe, M, Ueda, T.
Deposit date:2017-05-15
Release date:2018-03-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-function analyses of a stereotypic rheumatoid factor unravel the structural basis for germline-encoded antibody autoreactivity.
J. Biol. Chem., 293, 2018
1UFU
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BU of 1ufu by Molmil
Crystal structure of ligand binding domain of immunoglobulin-like transcript 2 (ILT2; LIR-1)
Descriptor: Immunoglobulin-like transcript 2
Authors:Shiroishi, M, Amano, K, Rasubala, L, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K.
Deposit date:2003-06-10
Release date:2004-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Kinetic and thermodynamic properties of the interaction between Immunoglobulin like transcript (ILT) and MHC class I
To be Published
1VDG
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BU of 1vdg by Molmil
Crystal structure of LIR1.01, one of the alleles of LIR1
Descriptor: Leukocyte immunoglobulin-like receptor subfamily B member 1
Authors:Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K.
Deposit date:2004-03-22
Release date:2005-08-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of LIR1.03, one of the alleles of LIR1
To be Published
2D3V
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BU of 2d3v by Molmil
Crystal Structure of Leukocyte Ig-like Receptor A5 (LILRA5/LIR9/ILT11)
Descriptor: leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1
Authors:Shiroishi, M, Kajikawa, M, Kuroki, K, Ose, T, Kohda, D, Maenaka, K.
Deposit date:2005-10-03
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the human monocyte-activating receptor,
J.Biol.Chem., 281, 2006
2DYP
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BU of 2dyp by Molmil
Crystal Structure of LILRB2(LIR2/ILT4/CD85d) complexed with HLA-G
Descriptor: 9 Mer Peptide From Histone H2A.x, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shiroishi, M, Kuroki, K, Rasubala, L, Kohda, D, Maenaka, K.
Deposit date:2006-09-15
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d)
Proc.Natl.Acad.Sci.Usa, 103, 2006
2D31
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BU of 2d31 by Molmil
Crystal structure of disulfide-linked HLA-G dimer
Descriptor: 9-mer peptide from Histone H2A, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shiroishi, M, Kuroki, K, Ose, T, Rasubala, L, Shiratori, I, Arase, H, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K.
Deposit date:2005-09-23
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Efficient Leukocyte Ig-like Receptor Signaling and Crystal Structure of Disulfide-linked HLA-G Dimer
J.Biol.Chem., 281, 2006
2DQI
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BU of 2dqi by Molmil
Crystal structure of hyhel-10 FV mutant (Ly50a) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQF
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BU of 2dqf by Molmil
Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQG
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BU of 2dqg by Molmil
Crystal structure of hyhel-10 FV mutant (Hy53f) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQC
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BU of 2dqc by Molmil
Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQD
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BU of 2dqd by Molmil
Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQH
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BU of 2dqh by Molmil
Crystal structure of hyhel-10 FV mutant (Hy58a) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQE
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BU of 2dqe by Molmil
Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQJ
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BU of 2dqj by Molmil
Crystal structure of hyhel-10 FV (wild-type) complexed with hen egg lysozyme at 1.8A resolution
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
1C08
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BU of 1c08 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor: ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
Authors:Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I.
Deposit date:1999-07-15
Release date:2000-07-19
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
1UGN
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BU of 1ugn by Molmil
Crystal structure of LIR1.02, one of the alleles of LIR1
Descriptor: Leukocyte immunoglobulin-like receptor 1
Authors:Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K.
Deposit date:2003-06-17
Release date:2004-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis.
Hum.Mol.Genet., 14, 2005
5Y25
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BU of 5y25 by Molmil
EGFR kinase domain mutant (T790M/L858R) with covalent ligand NS-062
Descriptor: (2R)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-(3-morpholin-4-ylpropoxy)quinazolin-6-yl]-1-(2-fluoranylethanoyl)pyrrolidine-2-carboxamide, Epidermal growth factor receptor
Authors:Shiroishi, M, Abe, Y, Caaveiro, J.M.M, Sakamoto, S, Morimoto, S, Fuchida, H, Shindo, N, Ojida, A.
Deposit date:2017-07-24
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Selective and reversible modification of kinase cysteines with chlorofluoroacetamides.
Nat.Chem.Biol., 15, 2019
5WQV
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BU of 5wqv by Molmil
Crystal structure of PriB mutant - S55A
Descriptor: Primosomal replication protein N
Authors:Fujiyama, S, Shiroishi, M, Katayama, T, Abe, Y, Ueda, T.
Deposit date:2016-11-28
Release date:2017-11-29
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Insight into the interaction between PriB and DnaT on bacterial DNA replication restart: Significance of the residues on PriB dimer interface and highly acidic region on DnaT.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6K60
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BU of 6k60 by Molmil
Structural and functional basis for HLA-G isoform recognition of immune checkpoint receptor LILRBs
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain G, ...
Authors:Kuroki, K, Matsubara, H, Kanda, R, Miyashita, N, Shiroishi, M, Fukunaga, Y, Kamishikiryo, J, Fukunaga, A, Hirose, K, Sugita, Y, Kita, S, Ose, T, Maenaka, K.
Deposit date:2019-05-31
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.149 Å)
Cite:Structural and Functional Basis for LILRB Immune Checkpoint Receptor Recognition of HLA-G Isoforms.
J Immunol., 203, 2019
3A6B
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BU of 3a6b by Molmil
Crystal Structure of HyHEL-10 Fv mutant LN32D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A67
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Crystal Structure of HyHEL-10 Fv mutant LN31D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-24
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010
3A6C
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Crystal Structure of HyHEL-10 Fv mutant LN92D complexed with hen egg white lysozyme
Descriptor: IG VH, anti-lysozyme, Lysozyme C, ...
Authors:Yokota, A, Tsumoto, K, Shiroishi, M, Nakanishi, T, Kondo, H, Kumagai, I.
Deposit date:2009-08-28
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme
J.Biol.Chem., 285, 2010

 

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